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BaseInfo

ncRNA ID	novel_zma_miR2797
Species	Zea mays
Class	miRNA
Genome position	Chr5:42281855-42281936 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	59 - UUCUACUGACGGUUUUCUUAAGGA - 82
Stem-loop(if miRNA)	--     C         U         -  A   A      U   UUCUA UGACGGUUU CUUAAGGAA CG CCU UAGAAA C   ||||| ||||||||| ||||||||| || ||| ||||||   AAGAU ACUGUCAAA GAAUUCUUU GU GGA AUCUUU G UA     C         -         U  C   C      A
Stem-loop sequence	UUCUACUGACGGUUUUCUUAAGGAACGACCUAUAGAAAUCGAUUUCUACAGGCUGUUUUCUUAAGAAACUGUCACUAGAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402984.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||||||||||||||*||||| targets:7   UCCUUAAGAAAACCGUCACUAGAA   30 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||||||||||||||*||||| targets:7   UCCUUAAGAAAACCGUCACUAGAA   30 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||||||||||||||*||||| targets:7   UCCUUAAGAAAACCGUCACUAGAA   30 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||*||||||||||*|||||| targets:51   UCCUUAUGAAAACCGUCUGUAGAA   74 Target Full Sequence	2.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||*||||||||||*|||||| targets:51   UCCUUAUGAAAACCGUCUGUAGAA   74 Target Full Sequence	2.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   ||||||*||||||||||*|||||| targets:51   UCCUUAUGAAAACCGUCUGUAGAA   74 Target Full Sequence	2.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
EU958089.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   *|||*|||||=||||*|||||||| targets:862   ACCUCAAGAAGACCGACAGUAGAA   885 Target Full Sequence	2.5	Zea mays clone 1672753 mRNA sequence	NA	coding protein	psRNATarget
NM_001175016.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   *|||*|||||=||||*|||||||| targets:852   ACCUCAAGAAGACCGACAGUAGAA   875 Target Full Sequence	2.5	Zea mays putative peroxygenase 4 (pco064372), mRNA	NA	coding protein	psRNATarget
BT063687.1	ncRNA:24   AGGAAUUCUUUUGGCAGUCAUCUU   1   *|||*|||||=||||*|||||||| targets:852   ACCUCAAGAAGACCGACAGUAGAA   875 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0095I08 mRNA, complete cds	NA	coding protein	psRNATarget