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BaseInfo

ncRNA ID	novel_zma_miR2794
Species	Zea mays
Class	miRNA
Genome position	Chr9:131692702-131692814 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287159;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - UAAAAUGGAAUAAAGUAGAGGGAC - 24
Stem-loop(if miRNA)	--     C                  C C      AC       A          C   CCCUC AUUUUAUUCCAUUUUAGU C UAAAUU  UAAAUAU GAAACUAAAA U   ||||| |||||||||||||||||| | ||||||  ||||||| |||||||||| C   GGGAG UGAAAUAAGGUAAAAUUA G AUUUAA  AUUUAUA CUUUGAUUUU U CA     A                  A U      CA       C          A
Stem-loop sequence	CCCUCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCAUAUUUAACAAUUUAUGAAUUAAAAUGGAAUAAAGUAGAGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:295   GUCCCUCCAUUUUAUUCCAUUUUA   318 Target Full Sequence	2.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT038994.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||==|||||=|||||||=|||||| targets:1106   GUUUCUCUAUUUUAUUCUAUUUUA   1129 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147048.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||==|||||=|||||||=|||||| targets:1106   GUUUCUCUAUUUUAUUCUAUUUUA   1129 Target Full Sequence	2.5	Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=|||*|||||||||||||||| targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150 Target Full Sequence	1.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=|||*|||||||||||||||| targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150 Target Full Sequence	1.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193 Target Full Sequence	2.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193 Target Full Sequence	2.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193 Target Full Sequence	2.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102 Target Full Sequence	2.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102 Target Full Sequence	2.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|=|||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102 Target Full Sequence	2.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=|||*|=|||||||||||||| targets:2152   GUCUCUCCAUUUUAUUCCAUUUUA   2175 Target Full Sequence	2.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||=*|=|||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUUUA   2123 Target Full Sequence	3.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||=*|=|||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUUUA   2123 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
EU946945.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=|||||=|||||||*|||||| targets:597   GUCUCUCUAUUUUAUUCAAUUUUA   620 Target Full Sequence	2.5	Zea mays clone 325236 mRNA sequence	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||=*|=|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53 Target Full Sequence	3.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||=*|=|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53 Target Full Sequence	3.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||=*|=|||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53 Target Full Sequence	3.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||||||*|*|||||||||||||| targets:144   GUCCCUCCAAUUUAUUCCAUUUUA   167 Target Full Sequence	2.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||**|||||||||||||||| targets:30   GUCCCUACACUUUAUUCCAUUUUA   53 Target Full Sequence	2.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||**|||||||||||||||| targets:30   GUCCCUACACUUUAUUCCAUUUUA   53 Target Full Sequence	2.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||**|||||||||||||||| targets:30   GUCCCUACACUUUAUUCCAUUUUA   53 Target Full Sequence	2.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||**|=|||||||||||||| targets:1000   GUCCCUACAUUUUAUUCCAUUUUA   1023 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||||**|=|||||||||||||| targets:780   GUCCCUAGAUUUUAUUCCAUUUUA   803 Target Full Sequence	3.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:158   GUCCAUCCACUUUAUUCUAUUUUA   181 Target Full Sequence	2.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:158   GUCCAUCCACUUUAUUCUAUUUUA   181 Target Full Sequence	2.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:158   GUCCAUCCACUUUAUUCUAUUUUA   181 Target Full Sequence	2.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
JB169209.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:4   GUCCAUCCACUUUAUUCUAUUUUA   27 Target Full Sequence	2.5	Sequence 6873 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240878.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:4   GUCCAUCCACUUUAUUCUAUUUUA   27 Target Full Sequence	2.5	Sequence 6873 from Patent EP2985353	NA	coding protein	psRNATarget
HI408748.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||||*||*|||||||||=|||||| targets:4   GUCCAUCCACUUUAUUCUAUUUUA   27 Target Full Sequence	2.5	Sequence 6873 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   *||==||*|=|||||||||||||| targets:2085   AUCUUUCCAUUUUAUUCCAUUUUA   2108 Target Full Sequence	2.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=||**|=|||||||||||||| targets:843   GUCUCUACAUUUUAUUCCAUUUUA   866 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   |||=||**|=|||||||||||||| targets:843   GUCUCUACAUUUUAUUCCAUUUUA   866 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   CAGGGAGAUGAAAUAAGGUAAAAU   1   ||=|||**|=|||||||||||||| targets:580   GUUCCUACAUUUUAUUCCAUUUUA   603 Target Full Sequence	3.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||||||||| targets:1   UCUACUUUAUUCCAUUUUA   19 Target Full Sequence	0.0	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
JB163859.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||||||||| targets:1   UCUACUUUAUUCCAUUUUA   19 Target Full Sequence	0.0	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
HI403398.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||||||||| targets:1   UCUACUUUAUUCCAUUUUA   19 Target Full Sequence	0.0	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
JB163832.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||=|||||||||||||| targets:1   UCUAUUUUAUUCCAUUUUA   19 Target Full Sequence	1.0	Sequence 1496 from Patent EP2559767	NA	coding protein	psRNATarget
HI403345.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||=|||||| targets:1   UCUACUUUAUUCUAUUUUA   19 Target Full Sequence	1.5	Sequence 1470 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235475.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||=|||||| targets:1   UCUACUUUAUUCUAUUUUA   19 Target Full Sequence	1.5	Sequence 1470 from Patent EP2985353	NA	coding protein	psRNATarget
JB163806.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||||||||||=|||||| targets:1   UCUACUUUAUUCUAUUUUA   19 Target Full Sequence	1.5	Sequence 1470 from Patent EP2559767	NA	coding protein	psRNATarget
HI403371.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||=|||||||||||||| targets:1   UCUAUUUUAUUCCAUUUUA   19 Target Full Sequence	1.0	Sequence 1496 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235501.1	ncRNA:19   AGAUGAAAUAAGGUAAAAU   1   ||||=|||||||||||||| targets:1   UCUAUUUUAUUCCAUUUUA   19 Target Full Sequence	1.0	Sequence 1496 from Patent EP2985353	NA	coding protein	psRNATarget