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BaseInfo

ncRNA ID	novel_zma_miR2791
Species	Zea mays
Class	miRNA
Genome position	Chr9:138349140-138349201 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - AGGAUCGGAGGGGAUUGAGGGAGA - 24
Stem-loop(if miRNA)	--                           UA   AGGAUCGGAGGGGAUUGAGGGAGAAAU  G   |||||||||||||||||||||||||||   UUCUAGCCUCUCCUAACUCCCUCUUUA  U AC                           CU
Stem-loop sequence	AGGAUCGGAGGGGAUUGAGGGAGAAAUUAGUUCAUUUCUCCCUCAAUCCUCUCCGAUCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163479.1	ncRNA:24   AGAGG--GAGUUAGGGGAGGCUAGGA   1   |=|||--||||||||||||||||||| targets:52   UUUCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	2.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   AGAGG--GAGUUAGGGGAGGCUAGGA   1   |=|||--||||||||||||||||||| targets:52   UUUCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	2.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   AGAGG--GAGUUAGGGGAGGCUAGGA   1   |=|||--||||||||||||||||||| targets:52   UUUCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	2.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||*||||||||||||||||||||| targets:2150   UCCCCCUCAAUCCCCUCCGAUCCU   2173 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||||=|||||||||||||*||||| targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   |=|||||=||||||||||*||||| targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||*||||||||||||||||||||* targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198 Target Full Sequence	1.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||*|||||||||||||||*||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||*|||||||||||||||*||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||*|||||||||||||||*||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGAG-GGAGUUAGGGGAGGCUAGGA   1   |=||-||||||||||||||*||||| targets:74   UUUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGAG-GGAGUUAGGGGAGGCUAGGA   1   |=||-||||||||||||||*||||| targets:40   UUUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||||*|||||||||||||*||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||||*|||||||||||||*||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   ||||*|||||||||||||*||||* targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
BT066985.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   *|||||||**|||||||||||||* targets:3993   CCUCCCUCCCUCCCCUCCGAUCCA   4016 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0139G10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176013.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   *|||||||**|||||||||||||* targets:3993   CCUCCCUCCCUCCCCUCCGAUCCA   4016 Target Full Sequence	3.0	Zea mays Sister chromatid cohesion 1 protein 4 (umc1400), mRNA	NA	coding protein	psRNATarget
XM_008674963.2	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   *|||||||**|||||||||||||* targets:4042   CCUCCCUCCCUCCCCUCCGAUCCA   4065 Target Full Sequence	3.0	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 4 (umc1400), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549902.1	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   *|||||||**|||||||||||||* targets:4056   CCUCCCUCCCUCCCCUCCGAUCCA   4079 Target Full Sequence	3.0	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 4 (umc1400), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674962.2	ncRNA:24   AGAGGGAGUUAGGGGAGGCUAGGA   1   *|||||||**|||||||||||||* targets:4083   CCUCCCUCCCUCCCCUCCGAUCCA   4106 Target Full Sequence	3.0	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 4 (umc1400), transcript variant X1, mRNA	NA	coding protein	psRNATarget