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BaseInfo

ncRNA ID	novel_zma_miR2789
Species	Zea mays
Class	miRNA
Genome position	Chr8:97099787-97099868 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2089705
Length	21
Mature sequence(if miRNA)	1 - AGAAGGGGAUUGGAGGGGUUU - 21
Stem-loop(if miRNA)	--             A                      CAU   AGAAGGGGAUUGG GGGGUUUAAAUCCCCUCCUAGU   U   ||||||||||||| ||||||||||||||||||||||   UCUUCCCCUAACC CCCCAAAUUUAGGGGAGGAUCA   U UG             A                      UUU
Stem-loop sequence	AGAAGGGGAUUGGAGGGGUUUAAAUCCCCUCCUAGUCAUUUUUUACUAGGAGGGGAUUUAAACCCCACCAAUCCCCUUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548160.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||=|||=||||||||||| targets:4796   AAACCUCUCUAAUCCCCUUCU   4816 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||=|||=||||||||||| targets:5023   AAACCUCUCUAAUCCCCUUCU   5043 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||*||| targets:82   AAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||*||| targets:82   AAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||*||| targets:82   AAACCCCUCCAAUCCCCAUCU   102 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||*||||||| targets:95   AAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||*||||||| targets:95   AAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||*||||||| targets:95   AAACCCCUCCAAUACCCUUCU   115 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||*||| targets:1602   AAACCCCUCCAAUCCCCCUCU   1622 Target Full Sequence	1.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551510.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   |||||||||||||||||*||* targets:1566   AAACCCCUCCAAUCCCCCUCA   1586 Target Full Sequence	2.5	PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   ||*|=|||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	3.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:19   UGGGGAGGUUAGGGGAAGA   1   *|||||=|||||||||||| targets:1   UCCCCUUCAAUCCCCUUCU   19 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   *|||||||||||||||||*|* targets:1031   UAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
NM_001152680.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   *=||||||||||||||||*|* targets:139   CGACCCCUCCAAUCCCCUACC   159 Target Full Sequence	2.5	Zea mays putative ADP-ribosylation factor GTPase-activating protein AGD14 (csu191), mRNA	NA	coding protein	psRNATarget
BT060769.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   *=||||||||||||||||*|* targets:139   CGACCCCUCCAAUCCCCUACC   159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0046M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674496.2	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   *=||||||||||||||||*|* targets:138   CGACCCCUCCAAUCCCCUACC   158 Target Full Sequence	2.5	PREDICTED: Zea mays putative ADP-ribosylation factor GTPase-activating protein AGD14 (csu191), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955372.1	ncRNA:21   UUUGGGGAGGUUAGGGGAAGA   1   *=||||||||||||||||*|* targets:78   CGACCCCUCCAAUCCCCUACC   98 Target Full Sequence	2.5	Zea mays clone 1529694 mRNA sequence	NA	coding protein	psRNATarget