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BaseInfo

ncRNA ID	novel_zma_miR2785
Species	Zea mays
Class	miRNA
Genome position	Chr1:181630661-181630718 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - UUGGUUUGUGGAAUAAAAUGGGUU - 24
Stem-loop(if miRNA)	--         --     AAAA     --   U   UUGGUUUGU  GGAAU    UGGGU  UGA C   |||||||||  |||||    |||||  |||   AAUCGAAUA  CCUUA    ACCCA  ACU C AU         UU     ----     CC   A
Stem-loop sequence	UUGGUUUGUGGAAUAAAAUGGGUUGAUCCAUCACCACCCAAUUCCUUAUAAGCUAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670082.2	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   ||||||||*||||||||||||||| targets:2865   AACCCAUUCUAUUCCACAAACCAA   2888 Target Full Sequence	1.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670083.2	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   ||||||||*||||||||||||||| targets:2841   AACCCAUUCUAUUCCACAAACCAA   2864 Target Full Sequence	1.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001196738.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=|=|||||||||||||||=|| targets:1143   AACUCGUUUUAUUCCACAAACUAA   1166 Target Full Sequence	2.5	Zea mays Anaphase-promoting complex subunit 10 (LOC100502261), mRNA	NA	coding protein	psRNATarget
BT087565.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=|=|||||||||||||||=|| targets:1143   AACUCGUUUUAUUCCACAAACUAA   1166 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0112P20 mRNA, complete cds	NA	coding protein	psRNATarget
EU957763.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||*||||||||||||||| targets:1321   AACUCAUUCUAUUCCACAAACCAA   1344 Target Full Sequence	1.0	Zea mays clone 1615157 mRNA sequence	NA	coding protein	psRNATarget
BT088271.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||*||||||||||||||| targets:1267   AACUCAUUCUAUUCCACAAACCAA   1290 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0109D11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088243.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||*||||||||||||||| targets:728   AACUCAUUCUAUUCCACAAACCAA   751 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0092D01 mRNA, complete cds	NA	coding protein	psRNATarget
BT085306.2	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||*||||||||||||||| targets:883   AACUCAUUCUAUUCCACAAACCAA   906 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0370B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546118.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   =||=||||*||||=|||||||||| targets:77   GACUCAUUCUAUUUCACAAACCAA   100 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103641744 (LOC103641744), mRNA	NA	coding protein	psRNATarget
EZ052905.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||==|||*|||||||||||=||| targets:116   AACUUAUUAUAUUCCACAAAUCAA   139 Target Full Sequence	2.5	TSA: Zea mays contig54026, mRNA sequence	NA	coding protein	psRNATarget
BT018328.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||**|||||||||||||| targets:559   AACUCAUUCCAUUCCACAAACCAA   582 Target Full Sequence	2.0	Zea mays clone EL01T0208F04.c mRNA sequence	NA	coding protein	psRNATarget
EZ516623.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||**|||||||||||||| targets:70   AACUCAUUCCAUUCCACAAACCAA   93 Target Full Sequence	2.0	TSA: Zea mays cultivar W22 CL30Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ076283.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||*|*||||||||||||||| targets:37   AACUCAAUCUAUUCCACAAACCAA   60 Target Full Sequence	2.0	TSA: Zea mays contig11920, mRNA sequence	NA	coding protein	psRNATarget
EZ107666.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||||**|||||||||||||| targets:145   AACUCAUUCCAUUCCACAAACCAA   168 Target Full Sequence	2.0	TSA: Zea mays contig43324, mRNA sequence	NA	coding protein	psRNATarget
XM_020548364.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   ||==||||**|||||||||||||| targets:1714   AAUUCAUUCCAUUCCACAAACCAA   1737 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020548362.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   ||==||||**|||||||||||||| targets:1714   AAUUCAUUCCAUUCCACAAACCAA   1737 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020548365.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   ||==||||**|||||||||||||| targets:1713   AAUUCAUUCCAUUCCACAAACCAA   1736 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X17, mRNA	NA	coding protein	psRNATarget
EZ078041.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |=*|=|||*||||||||||||||| targets:38   AGACUAUUCUAUUCCACAAACCAA   61 Target Full Sequence	1.0	TSA: Zea mays contig13680, mRNA sequence	NA	coding protein	psRNATarget
XM_008657392.2	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |=*|*|||||=||||||||||=|| targets:1831   AGACGAUUUUGUUCCACAAACUAA   1854 Target Full Sequence	2.5	PREDICTED: Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC103634802), mRNA	NA	coding protein	psRNATarget
EZ056855.1	ncRNA:24   UUGGGUAAAAUAAGGUGUUUGGUU   1   |||=||*|**|||||||||||||| targets:73   AACUCAAUCCAUUCCACAAACCAA   96 Target Full Sequence	3.0	TSA: Zea mays contig57977, mRNA sequence	NA	coding protein	psRNATarget