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BaseInfo

ncRNA ID	novel_zma_miR2784
Species	Zea mays
Class	miRNA
Genome position	Chr8:70052333-70052523 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - AGUAAGGGGGUGUUUGGUUUCUAG - 24
Stem-loop(if miRNA)	--AGUA                                       AG          A       UCCA     A C                 C       AGGGGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCU  AUUUUAUUCC UUUUAGU    AAAUU C AAAUAUAGAAACUAAAA U       |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||    ||||| | ||||||||||||||||| U       UCCCCCACAAACCAAAGAUCCCUGAUUACAAAUCAGGGA  UAAAAUAAGG AAAAUCA    UUUAA G UUUAUAUCUUUGAUUUU U UUUGAA                                       AG          A       CAUA     C A                 A
Stem-loop sequence	AGUAAGGGGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCUAGAUUUUAUUCCAUUUUAGUUCCAAAAUUACCAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUACACUAAAAAGGAAUAAAAUGAAGGGACUAAACAUUAGUCCCUAGAAACCAAACACCCCCUAAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001153051.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   |||||||||||||||||||||||| targets:943   CUAGAAACCAAACACCCCCUUACU   966 Target Full Sequence	0.0	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   |||||||||||||||||||||||| targets:943   CUAGAAACCAAACACCCCCUUACU   966 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ||||||||||||||||||=||||| targets:1254   CUAGAAACCAAACACCCCUUUACU   1277 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ||||||||||||||||||=||||| targets:1254   CUAGAAACCAAACACCCCUUUACU   1277 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674147.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ||||||||||||||||||||||=* targets:33   CUAGAAACCAAACACCCCCUUAUA   56 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ||||||||||||||||||||||*| targets:967   CUAGAAACCAAACACCCCCUUAGU   990 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957613.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   *||||||=||||=||||||||||| targets:785   AUAGAAAUCAAAUACCCCCUUACU   808 Target Full Sequence	2.5	Zea mays clone 1599137 mRNA sequence	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ||||||||=|||||||||||||*| targets:805   CUAGAAACUAAACACCCCCUUAGU   828 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   =|||||||||||||||||||||** targets:1399   UUAGAAACCAAACACCCCCUUAAG   1422 Target Full Sequence	2.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAU-GA   1   ||*|||||||||||||||||||-|| targets:971   CUUGAAACCAAACACCCCCUUAGCU   995 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAU-GA   1   ||*|||||||||||||||||||-|| targets:971   CUUGAAACCAAACACCCCCUUAGCU   995 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676281.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   |||*||||||||||||||||||** targets:48   CUACAAACCAAACACCCCCUUAGC   71 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA	NA	coding protein	psRNATarget
XM_008657966.2	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   |||-||||||||||||*||||||| targets:126   CUA-AAACCAAACACCACCUUACU   148 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   *||*||||||||||||||||||*| targets:298   AUAUAAACCAAACACCCCCUUAGU   321 Target Full Sequence	1.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   *||*||||||||||||||||||*| targets:298   AUAUAAACCAAACACCCCCUUAGU   321 Target Full Sequence	1.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   *||*||||||||||||||||||*| targets:298   AUAUAAACCAAACACCCCCUUAGU   321 Target Full Sequence	1.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   *||*||||||||||||||||||*| targets:423   AUAUAAACCAAACACCCCCUUAGU   446 Target Full Sequence	1.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU955810.1	ncRNA:21   CUUUGGUUUGUGGGGGAAUGA   1   |||||||||||||||||||*| targets:1   GAAACCAAACACCCCCUUAGU   21 Target Full Sequence	1.5	Zea mays clone 1547217 mRNA sequence	NA	coding protein	psRNATarget
EZ101531.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   |||--||||||||||*|||||||| targets:36   CUA--AACCAAACACACCCUUACU   57 Target Full Sequence	1.5	TSA: Zea mays contig37187, mRNA sequence	NA	coding protein	psRNATarget
EU958282.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAU-GA   1   |***||||||||||||||||||-|| targets:17   CCUUAAACCAAACACCCCCUUAACU   41 Target Full Sequence	3.0	Zea mays clone 1683099 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   =***||||||||||||||||||=* targets:1230   UCUCAAACCAAACACCCCCUUAUA   1253 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   =***||||||||||||||||||=* targets:1231   UCUCAAACCAAACACCCCCUUAUA   1254 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU952132.1	ncRNA:24   GAU----CUUUGGUUUGUGGGGGAAUGA   1   ||=----|*||||||||||*|||||||| targets:276   CUGUCCCGCAACCAAACACACCCUUACU   303 Target Full Sequence	1.5	Zea mays clone 1168259 mRNA sequence	NA	coding protein	psRNATarget
XM_020551947.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ***|*|||||||||||||||||=* targets:60   GGUGUAACCAAACACCCCCUUAUG   83 Target Full Sequence	2.5	PREDICTED: Zea mays protein ABSCISIC ACID-INSENSITIVE 5-like (LOC109945634), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551948.1	ncRNA:24   GAUCUUUGGUUUGUGGGGGAAUGA   1   ***|*|||||||||||||||||=* targets:60   GGUGUAACCAAACACCCCCUUAUG   83 Target Full Sequence	2.5	PREDICTED: Zea mays protein ABSCISIC ACID-INSENSITIVE 5-like (LOC109945634), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552848.1	ncRNA:24   GA--UCUUUGGUUUGUGGGGGAAUGA   1   ||--=|=|*||||||||||*|||||| targets:1774   CUUCGGGAUCCAAACACCCGCUUACU   1799 Target Full Sequence	2.5	PREDICTED: Zea mays shaggy-related protein kinase alpha-like (LOC103655927), mRNA	NA	coding protein	psRNATarget