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BaseInfo

ncRNA ID	novel_zma_miR2783
Species	Zea mays
Class	miRNA
Genome position	Chr8:67219331-67219462 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AAGGCCUGUUUGGUUCGUGGCUAA - 24
Stem-loop(if miRNA)	--AA   C       U   UG   AACUA                -------------        CG   G     GGC UGUUUGG UCG  GCU     UGCCACACUUUGCCUA             AGGUUAGU  UUC A     ||| ||||||| |||  |||     ||||||||||||||||             ||||||||  ||| A     CCG ACAAACC AGC  CGG     ACGGUGUGAAACGGAU             UCCAAUCA  AAG U AUUC   U       U   GU   AGUUA                UGAAAAGACGGAU        AG   U
Stem-loop sequence	AAGGCCUGUUUGGUUCGUGGCUAACUAUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAUUGAGGCUGCGAUCCAAACAUGCCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163853.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	0.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	0.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||||||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	0.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||||=||| targets:833   UUAGCCACGAACCAAACAGGUCUU   856 Target Full Sequence	1.5	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||||=||| targets:833   UUAGCCACGAACCAAACAGGUCUU   856 Target Full Sequence	1.5	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||||=||| targets:814   UUAGCCACGAACCAAACAGGUCUU   837 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||||||* targets:1068   UUAGCCACGAACCAAACAGGCCUG   1091 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	1.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	1.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   |||||||||||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	1.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||*||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||*||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||*||||| targets:107   UUAGCCACGAACCAAACAAGCCUU   130 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||*||||||||||||||| targets:943   UUAGCCACAAACCAAACAGGCCUU   966 Target Full Sequence	1.0	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||*||||| targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044 Target Full Sequence	1.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||*||||| targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044 Target Full Sequence	1.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||*||||||||||||||| targets:1427   UUAGCCACAAACCAAACAGGCCUU   1450 Target Full Sequence	1.0	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||||||*| targets:2491   UUAGCCACGAACCAAACAGGCCCU   2514 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||||||||||||||||** targets:818   UUAGCCACGAACCAAACAGGCCCA   841 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||*|||||||||||||*| targets:995   UUAGCCACAAACCAAACAGGCCCU   1018 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||*|||||||||*||||| targets:1410   UUAGCCACAAACCAAACAUGCCUU   1433 Target Full Sequence	2.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCCGGAA   1   ||||||||*|||||||||||||*| targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
BT069790.1	ncRNA:24   AAU--CGGUGCUUGGUUUGUCCGGAA   1   ||=--||*||||||||||||*||||| targets:1353   UUGAGGCAACGAACCAAACAUGCCUU   1378 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0287K05 mRNA, complete cds	NA	coding protein	psRNATarget