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BaseInfo

ncRNA ID	novel_zma_miR2781
Species	Zea mays
Class	miRNA
Genome position	Chr8:36816532-36816685 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2089715;SRR2287161;SRR5451004;SRR5451006;SRR2089701;SRR2089704
Length	22
Mature sequence(if miRNA)	133 - CCCUAAGGGUUUGUUCGGUUAU - 154
Stem-loop(if miRNA)	--                  -----------  G                          A  AA          CA     A   AACCGAACAAGCCCUUAG           UG UAAGGGAUCCCAAGGGGAUUCAUGGG GA  AAUCCCCUUG  AUUCA U   ||||||||||||||||||           || |||||||||||||||||||||||||| ||  ||||||||||  |||||   UUGGCUUGUUUGGGAAUC           AC AUUCCCUAGGGUUCCCCUAGGUACCC CU  UUAGGGGAAC  UAAGU U UA                  CCAACUAAACU  G                          -  CC          AA     U
Stem-loop sequence	AACCGAACAAGCCCUUAGUGGUAAGGGAUCCCAAGGGGAUUCAUGGGAGAAAAAUCCCCUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCCAUGGAUCCCCUUGGGAUCCCUUAGCAUCAAAUCAACCCUAAGGGUUUGUUCGGUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539455.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   ||||||||||||=||||||||| targets:310   AUAACCGAACAAGCCCUUAGGG   331 Target Full Sequence	1.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403090.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   *|||||||||||=||||||||| targets:132   CUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   *|||||||||||=||||||||| targets:132   CUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   *|||||||||||=||||||||| targets:132   CUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
EU964623.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   ||||||||||||=||||||||* targets:1546   AUAACCGAACAAGCCCUUAGGC   1567 Target Full Sequence	2.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   ||||||||||||=||||||||* targets:2000   AUAACCGAACAAGCCCUUAGGU   2021 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:22   UAUUGGCUUGUUUGGGAAU-CCC   1   |*|||||||||||||||||-||| targets:1104   AGAACCGAACAAACCCUUAAGGG   1126 Target Full Sequence	3.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   =||||||||||*|||||||||* targets:94   GUAACCGAACACACCCUUAGGU   115 Target Full Sequence	2.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget
AY110566.1	ncRNA:22   UAUUGGCUUGUUUGGGAAUCCC   1   =|||||*||||||*|||||||| targets:341   GUAACCAAACAAAGCCUUAGGG   362 Target Full Sequence	2.5	Zea mays CL45690_1 mRNA sequence	NA	coding protein	psRNATarget