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BaseInfo

ncRNA ID	novel_zma_miR2779
Species	Zea mays
Class	miRNA
Genome position	Chr1:177244359-177244440 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2287164;SRR2287165;SRR5451003;SRR5451004;SRR2089702
Length	21
Mature sequence(if miRNA)	1 - GGAGGGAAUUGGAGGGGCUAA - 21
Stem-loop(if miRNA)	--      A         G     A        U   U  A   GGAGGG AUUGGAGGG CUAAA UCCCUUCC UAU CA A   |||||| ||||||||| ||||| |||||||| ||| ||   CCUCUC UAACCUCCC GAUUU AGGGGAGG AUA GU A GA      C         A     A        U   U  U
Stem-loop sequence	GGAGGGAAUUGGAGGGGCUAAAAUCCCUUCCUUAUUCAAAAUUGUAUAUGGAGGGGAAUUUAGACCCUCCAAUCCUCUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163850.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget