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BaseInfo

ncRNA ID	novel_zma_miR2771
Species	Zea mays
Class	miRNA
Genome position	Chr5:107592349-107592449 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	78 - AUUUUAUUCCACUUUAGUAUAUAA - 101
Stem-loop(if miRNA)	--AU                AUA       CA              UAAC     UUUAUUCCACUUUAGU   UAAAUUG  AAAUAUGGAAACUA    U     ||||||||||||||||   |||||||  ||||||||||||||    C     AAAUAAGGUGAAAUCA   AUUUAAC  UUUAUACCUUUGAU    U GGUU                GUG       AG              UUUA
Stem-loop sequence	AUUUUAUUCCACUUUAGUAUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUCCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:1743   UUAUAGACUAAAGUGGAAUAAAAU   1766 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:104   UUAUAGACUAAAGUGGAAUAAAAU   127 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:1226   UUAUAGACUAAAGUGGAAUAAAAU   1249 Target Full Sequence	1.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   ||||||||||||*||||||||||| targets:926   UUAUAUACUAAAAUGGAAUAAAAU   949 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   ||||||||||||*||||||||||| targets:926   UUAUAUACUAAAAUGGAAUAAAAU   949 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:227   UUAUAGACUAAAGUGGAAUAAAAU   250 Target Full Sequence	1.0	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:59   UUAUAGACUAAAGUGGAAUAAAAU   82 Target Full Sequence	1.0	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:59   UUAUAGACUAAAGUGGAAUAAAAU   82 Target Full Sequence	1.0	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*|||||||||||||||||| targets:59   UUAUAGACUAAAGUGGAAUAAAAU   82 Target Full Sequence	1.0	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
BT060927.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   *|||||||||||||||||*||||| targets:1059   CUAUAUACUAAAGUGGAAAAAAAU   1082 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0072J20 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   AA-UAUAUGAUUUCACCUUAUUUUA   1   ||-||||||||||*||||||||||| targets:1353   UUCAUAUACUAAAAUGGAAUAAAAU   1377 Target Full Sequence	1.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
JB163418.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:116   UUAUACACUAAAAUGGAAUAAAAU   139 Target Full Sequence	2.5	Sequence 1082 from Patent EP2559767	NA	coding protein	psRNATarget
HI402957.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:116   UUAUACACUAAAAUGGAAUAAAAU   139 Target Full Sequence	2.5	Sequence 1082 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235087.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:116   UUAUACACUAAAAUGGAAUAAAAU   139 Target Full Sequence	2.5	Sequence 1082 from Patent EP2985353	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:98   UUAUACACUAAAAUGGAAUAAAAU   121 Target Full Sequence	2.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:98   UUAUACACUAAAAUGGAAUAAAAU   121 Target Full Sequence	2.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:98   UUAUACACUAAAAUGGAAUAAAAU   121 Target Full Sequence	2.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
JB163854.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:79   UUAUAGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1518 from Patent EP2559767	NA	coding protein	psRNATarget
HI403393.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:79   UUAUAGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1518 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235523.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||||*||||||*||||||||||| targets:79   UUAUAGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1518 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   ||||=*|||||||||*|||||||| targets:566   UUAUGAACUAAAGUGAAAUAAAAU   589 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ240878.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=|||||||*||||||||||* targets:87   UUAGGUACUAAAAUGGAAUAAAAA   110 Target Full Sequence	2.5	Sequence 6873 from Patent EP2985353	NA	coding protein	psRNATarget
HI408748.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=|||||||*||||||||||* targets:87   UUAGGUACUAAAAUGGAAUAAAAA   110 Target Full Sequence	2.5	Sequence 6873 from Patent EP2074227	NA	coding protein	psRNATarget
JB169209.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=|||||||*||||||||||* targets:87   UUAGGUACUAAAAUGGAAUAAAAA   110 Target Full Sequence	2.5	Sequence 6873 from Patent EP2559767	NA	coding protein	psRNATarget
EZ103355.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*|*||||||*||||||||||| targets:65   UUAGAGACUAAAAUGGAAUAAAAU   88 Target Full Sequence	2.5	TSA: Zea mays contig39012, mRNA sequence	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:2945   UUAGGAACUAAAAUGGAAUAAAAU   2968 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:1210   UUAGGGACUAAAAUGGAAUAAAAU   1233 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:1210   UUAGGGACUAAAAUGGAAUAAAAU   1233 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:946   UUAGGAACUAAAAUGGAAUAAAAU   969 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:946   UUAGGAACUAAAAUGGAAUAAAAU   969 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
HI403318.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1443 from Patent EP2074227	NA	coding protein	psRNATarget
HI403342.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1467 from Patent EP2074227	NA	coding protein	psRNATarget
HI403268.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
JB163803.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1467 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235475.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1470 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235448.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1443 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235363.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1358 from Patent EP2985353	NA	coding protein	psRNATarget
HI403398.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
JB163694.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1358 from Patent EP2559767	NA	coding protein	psRNATarget
JB163772.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1436 from Patent EP2559767	NA	coding protein	psRNATarget
JB163779.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1443 from Patent EP2559767	NA	coding protein	psRNATarget
JB163806.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1470 from Patent EP2559767	NA	coding protein	psRNATarget
JB163910.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235530.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1525 from Patent EP2985353	NA	coding protein	psRNATarget
HI403311.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1436 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
HI403233.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1358 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235441.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1436 from Patent EP2985353	NA	coding protein	psRNATarget
HI403449.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
JB163729.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235472.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1467 from Patent EP2985353	NA	coding protein	psRNATarget
HI403400.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1525 from Patent EP2074227	NA	coding protein	psRNATarget
HI403345.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1470 from Patent EP2074227	NA	coding protein	psRNATarget
JB163859.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
JB163861.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:79   UUAGGGACUAAAAUGGAAUAAAAU   102 Target Full Sequence	2.5	Sequence 1525 from Patent EP2559767	NA	coding protein	psRNATarget
JB163700.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:63   UUAGGGACUAAAAUGGAAUAAAAU   86 Target Full Sequence	2.5	Sequence 1364 from Patent EP2559767	NA	coding protein	psRNATarget
HI403239.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:63   UUAGGGACUAAAAUGGAAUAAAAU   86 Target Full Sequence	2.5	Sequence 1364 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235369.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:63   UUAGGGACUAAAAUGGAAUAAAAU   86 Target Full Sequence	2.5	Sequence 1364 from Patent EP2985353	NA	coding protein	psRNATarget
JB163764.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:61   UUAGGGACUAAAAUGGAAUAAAAU   84 Target Full Sequence	2.5	Sequence 1428 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235433.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:61   UUAGGGACUAAAAUGGAAUAAAAU   84 Target Full Sequence	2.5	Sequence 1428 from Patent EP2985353	NA	coding protein	psRNATarget
HI403303.1	ncRNA:24   AAUAUAUGAUUUCACCUUAUUUUA   1   |||*=*||||||*||||||||||| targets:61   UUAGGGACUAAAAUGGAAUAAAAU   84 Target Full Sequence	2.5	Sequence 1428 from Patent EP2074227	NA	coding protein	psRNATarget