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BaseInfo

ncRNA ID novel_zma_miR2770
Species Zea mays
Class miRNA
Genome position Chr8:90002842-90002932 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2089701;SRR2089704
Length 24
Mature sequence(if miRNA) 1 - AAAAGAAACGGAGGGAGUAUAUAG - 24
Stem-loop(if miRNA) ---AU                                        A
     UACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUA A
     ||||||||||||||||||||||||||||||||||||||||
     AUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCACAU A
GAUAU                                        U
Stem-loop sequence AUUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAAAUUACACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUAUAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020546695.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2200   UUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008666445.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2200   UUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020546694.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2200   UUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020546685.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2221   UUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546687.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2221   UUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546686.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2221   UUAUAUACUCCCUCCGUUUCUUUU   2244

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546691.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2200   UUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020546689.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2159   UUAUAUACUCCCUCCGUUUCUUUU   2182

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020546683.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2214   UUAUAUACUCCCUCCGUUUCUUUU   2237

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546684.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2239   UUAUAUACUCCCUCCGUUUCUUUU   2262

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546692.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2200   UUAUAUACUCCCUCCGUUUCUUUU   2223

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020546693.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||||||||||||||||||||||
targets:2138   UUAUAUACUCCCUCCGUUUCUUUU   2161

0.0 PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020546173.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|||||||||||||||||||||||
targets:1458   AUAUAUACUCCCUCCGUUUCUUUU   1481

0.0 PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA NA coding protein psRNATarget
EZ061772.1
ncRNA:24   GAU---AUAUGAGGGAGGCAAAGAAAA   1
  |||---|||||||||||||||||||||
targets:176   CUAGAUUAUACUCCCUCCGUUUCUUUU   202

0.0 TSA: Zea mays contig62894, mRNA sequence NA coding protein psRNATarget
LQ239435.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  *|||||||||||||||||||-||||
targets:1   AUAUAUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5430 from Patent EP2985353 NA coding protein psRNATarget
HI407305.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  *|||||||||||||||||||-||||
targets:1   AUAUAUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5430 from Patent EP2074227 NA coding protein psRNATarget
JB167766.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  *|||||||||||||||||||-||||
targets:1   AUAUAUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5430 from Patent EP2559767 NA coding protein psRNATarget
HI403369.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||||
targets:7   CU-UAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2074227 NA coding protein psRNATarget
LQ235499.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||||
targets:7   CU-UAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2985353 NA coding protein psRNATarget
JB163830.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||||
targets:7   CU-UAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1494 from Patent EP2559767 NA coding protein psRNATarget
EU968044.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  *|||||||||||||||||||-||||
targets:1019   AUAUAUACUCCCUCCGUUUCGUUUU   1043

3.0 Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds NA coding protein psRNATarget
BT035546.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  *|||||||||||||||||||-||||
targets:907   AUAUAUACUCCCUCCGUUUCGUUUU   931

3.0 Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds NA coding protein psRNATarget
NM_001156655.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  |||-||||||||||||||||||||
targets:1284   CUA-AUACUCCCUCCGUUUCUUUU   1306

0.0 Zea mays wax synthase (LOC100283756), mRNA NA coding protein psRNATarget
EU965844.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  |||-||||||||||||||||||||
targets:1284   CUA-AUACUCCCUCCGUUUCUUUU   1306

0.0 Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds NA coding protein psRNATarget
XM_020542418.1
ncRNA:24   GAUAU-AUGAGGGAGGCAAAGAAAA   1
  *||||-|||||||||||||||||||
targets:1971   AUAUACUACUCCCUCCGUUUCUUUU   1995

2.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008658752.2
ncRNA:24   GAUAU-AUGAGGGAGGCAAAGAAAA   1
  *||||-|||||||||||||||||||
targets:2038   AUAUACUACUCCCUCCGUUUCUUUU   2062

2.0 PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546615.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||||-|||||||||||||||||||
targets:2792   CUAU-UACUCCCUCCGUUUCUUUU   2814

0.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546614.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||||-|||||||||||||||||||
targets:2809   CUAU-UACUCCCUCCGUUUCUUUU   2831

0.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546612.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||||-|||||||||||||||||||
targets:2915   CUAU-UACUCCCUCCGUUUCUUUU   2937

0.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546613.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||||-|||||||||||||||||||
targets:3694   CUAU-UACUCCCUCCGUUUCUUUU   3716

0.0 PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA NA coding protein psRNATarget
JB170657.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2559767 NA coding protein psRNATarget
HI408710.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2074227 NA coding protein psRNATarget
JB169171.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2559767 NA coding protein psRNATarget
LQ242326.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2985353 NA coding protein psRNATarget
HI410196.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8321 from Patent EP2074227 NA coding protein psRNATarget
LQ240840.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||||||||||||
targets:1   AUGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6835 from Patent EP2985353 NA coding protein psRNATarget
LQ235531.1
ncRNA:24   GAUAUA-UGAGGGAGGCAAAGAAAA   1
  =|=|||-||||||||||||||||||
targets:5   UUGUAUUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1526 from Patent EP2985353 NA coding protein psRNATarget
HI403401.1
ncRNA:24   GAUAUA-UGAGGGAGGCAAAGAAAA   1
  =|=|||-||||||||||||||||||
targets:5   UUGUAUUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1526 from Patent EP2074227 NA coding protein psRNATarget
JB163862.1
ncRNA:24   GAUAUA-UGAGGGAGGCAAAGAAAA   1
  =|=|||-||||||||||||||||||
targets:5   UUGUAUUACUCCCUCCGUUUCUUUU   29

2.0 Sequence 1526 from Patent EP2559767 NA coding protein psRNATarget
XM_008651544.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|||||||=||||||||||||||
targets:1350   ACAUAUACUUCCUCCGUUUCUUUU   1373

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA NA coding protein psRNATarget
EU957018.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =*||||||||||||=|||||||||
targets:1995   UAAUAUACUCCCUCUGUUUCUUUU   2018

1.5 Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds NA coding protein psRNATarget
XM_008651543.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|||||||=||||||||||||||
targets:2491   ACAUAUACUUCCUCCGUUUCUUUU   2514

1.0 PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA NA coding protein psRNATarget
EU964901.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||*=|||||||||||||||||||
targets:492   UUAAGUACUCCCUCCGUUUCUUUU   515

0.0 Zea mays clone 282450 mRNA sequence NA coding protein psRNATarget
EU973473.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||-|=|||||||||||||||||||
targets:645   CU-UGUACUCCCUCCGUUUCUUUU   667

0.0 Zea mays clone 399411 mRNA sequence NA coding protein psRNATarget
NM_001151882.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||*=|||||||||||||||||||
targets:564   UUAAGUACUCCCUCCGUUUCUUUU   587

0.0 Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA NA coding protein psRNATarget
EU974849.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||*=|||||||||||||||||||
targets:564   UUAAGUACUCCCUCCGUUUCUUUU   587

0.0 Zea mays clone 459794 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008647346.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||-||||||||||||||||||||
targets:137   UUA-AUACUCCCUCCGUUUCUUUU   159

0.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|=*||||||||||||||||||||
targets:1146   UUGGAUACUCCCUCCGUUUCUUUU   1169

0.0 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669400.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ***|||||||||||||||||||||
targets:1595   AGUUAUACUCCCUCCGUUUCUUUU   1618

0.0 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537567.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =|||-|||||||||||||||||||
targets:1448   UUAU-UACUCCCUCCGUUUCUUUU   1470

0.0 PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA NA coding protein psRNATarget
LQ242145.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2985353 NA coding protein psRNATarget
JB170476.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2559767 NA coding protein psRNATarget
HI410015.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  ||=|||||||||=|||||||||
targets:1   AUGUACUCCCUCUGUUUCUUUU   22

1.5 Sequence 8140 from Patent EP2074227 NA coding protein psRNATarget
EU970288.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **||=||||||||=||||||||||
targets:1326   GCAUGUACUCCCUUCGUUUCUUUU   1349

1.5 Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds NA coding protein psRNATarget
HI407270.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|*|=|||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2074227 NA coding protein psRNATarget
JB167731.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|*|=|||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2559767 NA coding protein psRNATarget
LQ239400.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|*|=|||||||||||||||||||
targets:1   AUUUGUACUCCCUCCGUUUCUUUU   24

0.0 Sequence 5395 from Patent EP2985353 NA coding protein psRNATarget
HI403287.1
ncRNA:24   GAUA-UAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1412 from Patent EP2074227 NA coding protein psRNATarget
JB163748.1
ncRNA:24   GAUA-UAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1412 from Patent EP2559767 NA coding protein psRNATarget
LQ235417.1
ncRNA:24   GAUA-UAUGAGGGAGGCAAAGAAAA   1
  **||-||||||||||||||||||||
targets:5   AAAUGAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1412 from Patent EP2985353 NA coding protein psRNATarget
JB163728.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *||*|||=||||||||||||||||
targets:95   AUAAAUAUUCCCUCCGUUUCUUUU   118

1.0 Sequence 1392 from Patent EP2559767 NA coding protein psRNATarget
HI403267.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *||*|||=||||||||||||||||
targets:95   AUAAAUAUUCCCUCCGUUUCUUUU   118

1.0 Sequence 1392 from Patent EP2074227 NA coding protein psRNATarget
LQ235397.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *||*|||=||||||||||||||||
targets:95   AUAAAUAUUCCCUCCGUUUCUUUU   118

1.0 Sequence 1392 from Patent EP2985353 NA coding protein psRNATarget
BT017382.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGA-AAA   1
  =*|||||||||||||||||||-|||
targets:690   UCAUAUACUCCCUCCGUUUCUCUUU   714

3.0 Zea mays clone EL01N0326E08.c mRNA sequence NA coding protein psRNATarget
XM_008671993.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|||-|||||||||||||||||||
targets:1162   AUAU-UACUCCCUCCGUUUCUUUU   1184

0.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671992.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|||-|||||||||||||||||||
targets:1268   AUAU-UACUCCCUCCGUUUCUUUU   1290

0.0 PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA NA coding protein psRNATarget
JB163740.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||-=|||||||||||||||||||
targets:7   UUA-GUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2559767 NA coding protein psRNATarget
HI403279.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||-=|||||||||||||||||||
targets:7   UUA-GUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2074227 NA coding protein psRNATarget
JB163860.1
ncRNA:24   GAUA--UAUGAGGGAGGCAAAGAAAA   1
  **||--||||||||||||||||||||
targets:4   AGAUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2559767 NA coding protein psRNATarget
LQ235409.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  =||-=|||||||||||||||||||
targets:7   UUA-GUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1404 from Patent EP2985353 NA coding protein psRNATarget
HI403399.1
ncRNA:24   GAUA--UAUGAGGGAGGCAAAGAAAA   1
  **||--||||||||||||||||||||
targets:4   AGAUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2074227 NA coding protein psRNATarget
LQ235529.1
ncRNA:24   GAUA--UAUGAGGGAGGCAAAGAAAA   1
  **||--||||||||||||||||||||
targets:4   AGAUUCAUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1524 from Patent EP2985353 NA coding protein psRNATarget
BT024153.1
ncRNA:24   GAUA---UAUGAGGGAGGCAAAGAAAA   1
  =|=|---=|||||||||||||||||||
targets:182   UUGUCACGUACUCCCUCCGUUUCUUUU   208

0.0 Zea mays clone EL01N0438E01 mRNA sequence NA coding protein psRNATarget
EU952378.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|||||||||||||||||*||||
targets:708   AGAUAUACUCCCUCCGUUUAUUUU   731

1.5 Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
NM_001148943.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|*||||||||||||||||||||
targets:1538   GAAGAUACUCCCUCCGUUUCUUUU   1561

0.0 Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA NA coding protein psRNATarget
XM_020544250.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|*||||||||||||||||||||
targets:2430   GGACAUACUCCCUCCGUUUCUUUU   2453

0.0 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA NA coding protein psRNATarget
HI409699.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  |=|-|||||||||||||||||||
targets:1   UGU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7824 from Patent EP2074227 NA coding protein psRNATarget
HI409328.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2074227 NA coding protein psRNATarget
LQ241829.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  |=|-|||||||||||||||||||
targets:1   UGU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7824 from Patent EP2985353 NA coding protein psRNATarget
JB170160.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  |=|-|||||||||||||||||||
targets:1   UGU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7824 from Patent EP2559767 NA coding protein psRNATarget
LQ241458.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2985353 NA coding protein psRNATarget
JB169789.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||||||||||||||||
targets:1   CCAUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7453 from Patent EP2559767 NA coding protein psRNATarget
BT070166.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *||*=||||||||||||||=||||
targets:759   GUACGUACUCCCUCCGUUUUUUUU   782

1.5 Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds NA coding protein psRNATarget
NM_001328133.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *||*=||||||||||||||=||||
targets:759   GUACGUACUCCCUCCGUUUUUUUU   782

1.5 Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA NA coding protein psRNATarget
BT060817.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ****||||||||||||||||||||
targets:225   ACCAAUACUCCCUCCGUUUCUUUU   248

0.0 Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds NA coding protein psRNATarget
BT068381.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1104   AUGAAUACUCCCUCUGUUUCUUUU   1127

1.5 Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds NA coding protein psRNATarget
EU956063.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1057   AUGAAUACUCCCUCUGUUUCUUUU   1080

1.5 Zea mays clone 1556707 mRNA sequence NA coding protein psRNATarget
EU973028.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1163   AUGAAUACUCCCUCUGUUUCUUUU   1186

1.5 Zea mays clone 391970 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT088158.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1197   AUGAAUACUCCCUCUGUUUCUUUU   1220

1.5 Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds NA coding protein psRNATarget
XM_008656167.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1216   AUGAAUACUCCCUCUGUUUCUUUU   1239

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001138729.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1397   AUGAAUACUCCCUCUGUUUCUUUU   1420

1.5 Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA NA coding protein psRNATarget
BT035950.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1397   AUGAAUACUCCCUCUGUUUCUUUU   1420

1.5 Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds NA coding protein psRNATarget
XM_008656166.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  *|=*||||||||||=|||||||||
targets:1261   AUGAAUACUCCCUCUGUUUCUUUU   1284

1.5 PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669143.2
ncRNA:24   GAU--AUAUGAGGGAGGCAAAGAAAA   1
  =||--||||||||*||||||||||||
targets:2734   UUACUUAUACUCCAUCCGUUUCUUUU   2759

1.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008669142.2
ncRNA:24   GAU--AUAUGAGGGAGGCAAAGAAAA   1
  =||--||||||||*||||||||||||
targets:2664   UUACUUAUACUCCAUCCGUUUCUUUU   2689

1.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008669138.2
ncRNA:24   GAU--AUAUGAGGGAGGCAAAGAAAA   1
  =||--||||||||*||||||||||||
targets:2796   UUACUUAUACUCCAUCCGUUUCUUUU   2821

1.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547479.1
ncRNA:24   GAU--AUAUGAGGGAGGCAAAGAAAA   1
  =||--||||||||*||||||||||||
targets:3174   UUACUUAUACUCCAUCCGUUUCUUUU   3199

1.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547478.1
ncRNA:24   GAU--AUAUGAGGGAGGCAAAGAAAA   1
  =||--||||||||*||||||||||||
targets:3174   UUACUUAUACUCCAUCCGUUUCUUUU   3199

1.5 PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235486.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||**=|||||||||||||||||||
targets:6   CUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2985353 NA coding protein psRNATarget
JB163817.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||**=|||||||||||||||||||
targets:6   CUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2559767 NA coding protein psRNATarget
HI403356.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||**=|||||||||||||||||||
targets:6   CUUCGUACUCCCUCCGUUUCUUUU   29

0.0 Sequence 1481 from Patent EP2074227 NA coding protein psRNATarget
XM_008677073.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  |||*-|||||||||||||||||||
targets:1523   CUAC-UACUCCCUCCGUUUCUUUU   1545

0.0 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget
LQ240748.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  *||-|||||||||||||||||||
targets:1   AAU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2985353 NA coding protein psRNATarget
HI408570.1
ncRNA:21   AU-AUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 6695 from Patent EP2074227 NA coding protein psRNATarget
LQ240700.1
ncRNA:21   AU-AUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 6695 from Patent EP2985353 NA coding protein psRNATarget
HI408618.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  *||-|||||||||||||||||||
targets:1   AAU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2074227 NA coding protein psRNATarget
JB170422.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2559767 NA coding protein psRNATarget
JB169031.1
ncRNA:21   AU-AUGAGGGAGGCAAAGAAAA   1
  ||-|||||||||||||||||||
targets:1   UACUACUCCCUCCGUUUCUUUU   22

2.0 Sequence 6695 from Patent EP2559767 NA coding protein psRNATarget
JB169406.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2559767 NA coding protein psRNATarget
HI409961.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2074227 NA coding protein psRNATarget
JB169079.1
ncRNA:23   AUAUAUGAGGGAGGCAAAGAAAA   1
  *||-|||||||||||||||||||
targets:1   AAU-UACUCCCUCCGUUUCUUUU   22

0.0 Sequence 6743 from Patent EP2559767 NA coding protein psRNATarget
HI408945.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2074227 NA coding protein psRNATarget
LQ242091.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 8086 from Patent EP2985353 NA coding protein psRNATarget
LQ241075.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |*=|||||||||||||||||||
targets:1   AAGUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7070 from Patent EP2985353 NA coding protein psRNATarget
LQ239454.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  =||-||||||||||||||||-||||
targets:2   UUA-AUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5449 from Patent EP2985353 NA coding protein psRNATarget
HI407211.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1   CGGUGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2074227 NA coding protein psRNATarget
LQ239341.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1   CGGUGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2985353 NA coding protein psRNATarget
JB167785.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  =||-||||||||||||||||-||||
targets:2   UUA-AUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5449 from Patent EP2559767 NA coding protein psRNATarget
HI407324.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  =||-||||||||||||||||-||||
targets:2   UUA-AUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5449 from Patent EP2074227 NA coding protein psRNATarget
JB167672.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1   CGGUGUACUCCCUCCGUUUCGUUUU   25

3.0 Sequence 5336 from Patent EP2559767 NA coding protein psRNATarget
EZ112557.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|*=|||||||||||||||||||
targets:43   GGAGGUACUCCCUCCGUUUCUUUU   66

0.0 TSA: Zea mays contig48218, mRNA sequence NA coding protein psRNATarget
XM_020549872.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1260   CGGUGUACUCCCUCCGUUUCGUUUU   1284

3.0 PREDICTED: Zea mays uncharacterized LOC100382893 (LOC100382893), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175582.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1427   CGGUGUACUCCCUCCGUUUCGUUUU   1451

3.0 Zea mays uncharacterized LOC100382893 (LOC100382893), mRNA NA coding protein psRNATarget
BT065656.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAG-AAAA   1
  |*=|=|||||||||||||||-||||
targets:1427   CGGUGUACUCCCUCCGUUUCGUUUU   1451

3.0 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds NA coding protein psRNATarget
XM_008656936.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  **|*=|||||||||||||||||||
targets:159   AAAAGUACUCCCUCCGUUUCUUUU   182

0.0 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA NA coding protein psRNATarget
HI409599.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||=|||||||||||||
targets:1   UCAUACUCUCUCCGUUUCUUUU   22

1.0 Sequence 7724 from Patent EP2074227 NA coding protein psRNATarget
JB170060.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||=|||||||||||||
targets:1   UCAUACUCUCUCCGUUUCUUUU   22

1.0 Sequence 7724 from Patent EP2559767 NA coding protein psRNATarget
LQ241729.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  **||||||=|||||||||||||
targets:1   UCAUACUCUCUCCGUUUCUUUU   22

1.0 Sequence 7724 from Patent EP2985353 NA coding protein psRNATarget
EU963848.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  |||*=|||||*|||=|||||||||
targets:734   CUAAGUACUCGCUCUGUUUCUUUU   757

2.5 Zea mays clone 273406 salt tolerant protein mRNA, complete cds NA coding protein psRNATarget
NM_001158751.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  |||*=|||||*|||=|||||||||
targets:883   CUAAGUACUCGCUCUGUUUCUUUU   906

2.5 Zea mays salt tolerant protein (LOC100285861), mRNA NA coding protein psRNATarget
XM_020541158.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||---|||||||||||||||||||
targets:1026   CU---UACUCCCUCCGUUUCUUUU   1046

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541157.1
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||---|||||||||||||||||||
targets:1028   CU---UACUCCCUCCGUUUCUUUU   1048

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655254.2
ncRNA:24   GAUAUAUGAGGGAGGCAAAGAAAA   1
  ||---|||||||||||||||||||
targets:1047   CU---UACUCCCUCCGUUUCUUUU   1067

0.0 PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA NA coding protein psRNATarget
HI409615.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2074227 NA coding protein psRNATarget
LQ241745.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2985353 NA coding protein psRNATarget
JB170076.1
ncRNA:22   UAUAUGAGGGAGGCAAAGAAAA   1
  |**|||||||||||||||||||
targets:1   AACUACUCCCUCCGUUUCUUUU   22

0.0 Sequence 7740 from Patent EP2559767 NA coding protein psRNATarget
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