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BaseInfo

ncRNA ID	novel_zma_miR2767
Species	Zea mays
Class	miRNA
Genome position	Chr8:116644307-116644367 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	21
Mature sequence(if miRNA)	1 - UCGGGCACUCGGCAAAGACGU - 21
Stem-loop(if miRNA)	--         A        -------     UU   GUCUUUGCC AGUGCUCG       GCGCU  G   ||||||||| ||||||||       |||||   CAGAAACGG UCACGGGC       CGUGA  C UG         C        UAUCUUU     CC
Stem-loop sequence	GUCUUUGCCAAGUGCUCGGCGCUUUGCCCAGUGCUUUCUAUCGGGCACUCGGCAAAGACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943169.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   *|||||||||||||||||=|| targets:745   CCGUCUUUGCCGAGUGCCUGA   765 Target Full Sequence	1.5	Zea mays clone 1575275 mRNA sequence	NA	coding protein	psRNATarget
BT055423.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   ||*|||||||||||||||||| targets:143   ACUUCUUUGCCGAGUGCCCGA   163 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   ||*|||||||||||||||||| targets:143   ACUUCUUUGCCGAGUGCCCGA   163 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   ||*|||||||||||||||||| targets:2162   ACUUCUUUGCCGAGUGCCCGA   2182 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   ||*|||||||||||||||||| targets:2162   ACUUCUUUGCCGAGUGCCCGA   2182 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   ||*|||||||||||||=|||| targets:127   ACCUCUUUGCCGAGUGUCCGA   147 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
HI406093.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:78   AUGUUCUUUGCCGAGUGCCCGC   99 Target Full Sequence	3.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:78   AUGUUCUUUGCCGAGUGCCCGC   99 Target Full Sequence	3.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
JB166554.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:78   AUGUUCUUUGCCGAGUGCCCGC   99 Target Full Sequence	3.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   *|*|||||||||||||||||| targets:14   CCUUCUUUGCCGAGUGCCCGA   34 Target Full Sequence	1.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:900   AUGUUCUUUGCCGAGUGCCCGC   921 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
BT065228.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:900   AUGUUCUUUGCCGAGUGCCCGC   921 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU942429.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:911   AUGUUCUUUGCCGAGUGCCCGC   932 Target Full Sequence	3.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1319   AUGUUCUUUGCCGAGUGCCCGC   1340 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1323   AUGUUCUUUGCCGAGUGCCCGC   1344 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1398   AUGUUCUUUGCCGAGUGCCCGC   1419 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1403   AUGUUCUUUGCCGAGUGCCCGC   1424 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1403   AUGUUCUUUGCCGAGUGCCCGC   1424 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1408   AUGUUCUUUGCCGAGUGCCCGC   1429 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1449   AUGUUCUUUGCCGAGUGCCCGC   1470 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1532   AUGUUCUUUGCCGAGUGCCCGC   1553 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   |**|||||||||||||||||| targets:1175   AGCUCUUUGCCGAGUGCCCGA   1195 Target Full Sequence	1.0	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1794   AUGUUCUUUGCCGAGUGCCCGC   1815 Target Full Sequence	3.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1783   AUGUUCUUUGCCGAGUGCCCGC   1804 Target Full Sequence	3.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget
BT036012.1	ncRNA:21   UGCA-GAAACGGCUCACGGGCU   1   |=||-||||||||||||||||* targets:1783   AUGUUCUUUGCCGAGUGCCCGC   1804 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671736.2	ncRNA:21   UGCAGAAACGGCUCACGGGCU   1   |*|*||||||||||||||||| targets:251   AGGACUUUGCCGAGUGCCCGA   271 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL28 (LOC103647166), mRNA	NA	coding protein	psRNATarget