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BaseInfo

ncRNA ID	novel_zma_miR2763
Species	Zea mays
Class	miRNA
Genome position	Chr8:21493162-21493227 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - AUUUCUUUUUAGUUGUCGUUGGAU - 24
Stem-loop(if miRNA)	--AUUUCU                     U  A         UUUUAGUUGUCGUUGGAUAGU CA U         ||||||||||||||||||||| ||         AAAAUCAACAGCGACUUAUCA GU U GGCAAAAC                     C  U
Stem-loop sequence	AUUUCUUUUUAGUUGUCGUUGGAUAGUUCAAUUUUGCACUAUUCAGCGACAACUAAAACAAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406357.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||||||||||||||||||||* targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	1.0	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||||||||||||||||||||* targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	1.0	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
JB166818.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||||||||||||||||||||* targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	1.0	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235202.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	2.0	Sequence 1197 from Patent EP2985353	NA	coding protein	psRNATarget
HI403072.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	2.0	Sequence 1197 from Patent EP2074227	NA	coding protein	psRNATarget
JB163533.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	2.0	Sequence 1197 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241681.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	2.0	Sequence 7676 from Patent EP2985353	NA	coding protein	psRNATarget
JB170012.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	2.0	Sequence 7676 from Patent EP2559767	NA	coding protein	psRNATarget
HI409551.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	2.0	Sequence 7676 from Patent EP2074227	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	2.0	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	2.0	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	2.0	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:357   AUCCAGCGACAACUAAAAAGAAAC   380 Target Full Sequence	2.0	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:621   AUCCAGCGACAACUAAAAAGAAAC   644 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:1212   AUCCAGCGACAACUAAAAAGAAAC   1235 Target Full Sequence	2.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588 Target Full Sequence	2.0	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588 Target Full Sequence	2.0	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:1201   AUCCAGCGACAACUAAAAAGAAAC   1224 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|||||||||||||||||* targets:2578   AUCCAGCGACAACUAAAAAGAAAC   2601 Target Full Sequence	2.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||||||||||||||||* targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||||||||||||||||* targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||||||||||||||||* targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	2.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||||||||||||||||* targets:37   AUUCAGCGACAACUAAAAAGAAAC   60 Target Full Sequence	2.0	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||||||*||||||||||| targets:61   AUCCAGCGACAAAUAAAAAGAAAU   84 Target Full Sequence	2.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
HI403279.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||||||*||||||||||| targets:61   AUCCAGCGACAAAUAAAAAGAAAU   84 Target Full Sequence	2.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
JB163740.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||||||*||||||||||| targets:61   AUCCAGCGACAAAUAAAAAGAAAU   84 Target Full Sequence	2.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238914.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||||||||*||||* targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2985353	NA	coding protein	psRNATarget
JB167245.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||||||||*||||* targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2559767	NA	coding protein	psRNATarget
HI406784.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||||||||*||||* targets:44   AUCCAACGACAACUAAAACGAAAC   67 Target Full Sequence	2.5	Sequence 4909 from Patent EP2074227	NA	coding protein	psRNATarget
JB170144.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||=|||||||||||||* targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||=|||||||||||||* targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
HI409683.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||=||=|||=|||||||||||||* targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
HI403369.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||*||||||||||* targets:61   AUCCAACGACAAAUAAAAAGAAAC   84 Target Full Sequence	2.5	Sequence 1494 from Patent EP2074227	NA	coding protein	psRNATarget
JB163830.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||*||||||||||* targets:61   AUCCAACGACAAAUAAAAAGAAAC   84 Target Full Sequence	2.5	Sequence 1494 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235499.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||*||||||||||* targets:61   AUCCAACGACAAAUAAAAAGAAAC   84 Target Full Sequence	2.5	Sequence 1494 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020544250.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||||||||||||*||||||||||* targets:2485   AUCCAACGACAAAUAAAAAGAAAC   2508 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB166581.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||*||||||||||||||* targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
HI406120.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||*||||||||||||||* targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=||*||||||||||||||* targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	3.0	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||*|=|||||||||||||||||* targets:885   AUCGAGCGACAACUAAAAAGAAAC   908 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||*|=|||||||||||||||||* targets:885   AUCGAGCGACAACUAAAAAGAAAC   908 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|*|||||||||||||||* targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186 Target Full Sequence	3.0	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||=|*|||||||||||||||* targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186 Target Full Sequence	3.0	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
HI403399.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||*||||||||||||*||||| targets:61   AUCCACCGACAACUAAAACGAAAU   84 Target Full Sequence	2.5	Sequence 1524 from Patent EP2074227	NA	coding protein	psRNATarget
JB163860.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||*||||||||||||*||||| targets:61   AUCCACCGACAACUAAAACGAAAU   84 Target Full Sequence	2.5	Sequence 1524 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235529.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||||*||||||||||||*||||| targets:61   AUCCACCGACAACUAAAACGAAAU   84 Target Full Sequence	2.5	Sequence 1524 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   |||-|=|||||||||||||||||* targets:1383   AUC-AGCGACAACUAAAAAGAAAC   1405 Target Full Sequence	2.0	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963848.1	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||*||=||||||||||||*||||| targets:789   AUACAGCGACAACUAAAAUGAAAU   812 Target Full Sequence	2.5	Zea mays clone 273406 salt tolerant protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158751.2	ncRNA:24   UAGGUUGCUGUUGAUUUUUCUUUA   1   ||*||=||||||||||||*||||| targets:938   AUACAGCGACAACUAAAAUGAAAU   961 Target Full Sequence	2.5	Zea mays salt tolerant protein (LOC100285861), mRNA	NA	coding protein	psRNATarget