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BaseInfo

ncRNA ID novel_zma_miR2761
Species Zea mays
Class miRNA
Genome position Chr8:159253893-159253951 [-]
Reference genome RefGen_v4
Source SRR2089713
Length 20
Mature sequence(if miRNA) 40 - UUGGAGGGGAUUGAGGGGGC - 59
Stem-loop(if miRNA) --     GGG          -----   UAUA
  UUGGA   GAUUGAGGGG     GCA    A
  |||||   ||||||||||     |||
  AACUU   UUAACUCCCC     CGU    U
CU     ACA          UUAAU   UCCC
Stem-loop sequence UUGGAGGGGAUUGAGGGGGCAUAUAAUCCCUUGCUAAUUCCCCUCAAUUACAUUCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403493.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAA   51

0.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAA   51

0.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163954.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAA   51

0.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
XM_020546477.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  |||||||||||||||||||=
targets:10   GCCCCCUCAAUCCCCUCCAG   29

1.0 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
HI406027.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:88   GCCCCCUCAAUCCCCUUCAU   107

2.5 Sequence 4152 from Patent EP2074227 NA coding protein psRNATarget
LQ238157.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:88   GCCCCCUCAAUCCCCUUCAU   107

2.5 Sequence 4152 from Patent EP2985353 NA coding protein psRNATarget
JB166488.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:88   GCCCCCUCAAUCCCCUUCAU   107

2.5 Sequence 4152 from Patent EP2559767 NA coding protein psRNATarget
AY108800.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||=||||||||||||||*
targets:782   GCCCUCUCAAUCCCCUCCAU   801

2.0 Zea mays PCO127746 mRNA sequence NA coding protein psRNATarget
XM_008645760.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||=||||||||||||||*
targets:1469   GCCCUCUCAAUCCCCUCCAU   1488

2.0 PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649581.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||||||||||||||||=||
targets:1798   UCCCCCUCAAUCCCCUCUAA   1817

1.5 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551688.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||=|
targets:2150   UCCCCCUCAAUCCCCUCCGA   2169

1.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174804.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:2624   GCCCCCUCAAUCCCCUUCAU   2643

2.5 Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA NA coding protein psRNATarget
BT062966.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:2624   GCCCCCUCAAUCCCCUUCAU   2643

2.5 Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds NA coding protein psRNATarget
XM_008663899.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||||||||||||||||=||*
targets:2712   GCCCCCUCAAUCCCCUUCAU   2731

2.5 PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547043.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||=|
targets:3175   UCCCCCUCAAUCCCCUCCGA   3194

1.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget
HI403355.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *=|=||||||||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
JB163816.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *=|=||||||||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
LQ235485.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *=|=||||||||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAA   49

2.0 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
XM_008654031.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||=||||||||||||||||*
targets:1674   GCUCCCUCAAUCCCCUCCAU   1693

2.0 PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA NA coding protein psRNATarget
HI402991.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|||||||||||||=|||
targets:84   UCUCCCUCAAUCCCCUUCAA   103

2.5 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
JB163452.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|||||||||||||=|||
targets:84   UCUCCCUCAAUCCCCUUCAA   103

2.5 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
LQ235121.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|||||||||||||=|||
targets:84   UCUCCCUCAAUCCCCUUCAA   103

2.5 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
XM_008654495.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*|==||||||||||||||
targets:1327   GCACUUUCAAUCCCCUCCAA   1346

3.0 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
EU973567.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||==
targets:85   UCCCCCUCAAUCCCCUCCGG   104

2.5 Zea mays clone 401029 mRNA sequence NA coding protein psRNATarget
BT088155.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|=|||||||||||||||
targets:1463   UCUCUCUCAAUCCCCUCCAA   1482

2.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
XM_020543383.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||||=||||||||||=|||
targets:232   UCCCCUUCAAUCCCCUUCAA   251

2.5 PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA NA coding protein psRNATarget
EU952092.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:468   GCACCCUCAAUCCCCUCUAA   487

2.5 Zea mays clone 1163776 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008661692.2
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA NA coding protein psRNATarget
XM_008661691.2
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA NA coding protein psRNATarget
XM_008661689.2
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020544136.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020544139.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA NA coding protein psRNATarget
XM_020544133.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020544131.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020544137.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020544135.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544134.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020544132.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020544126.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544125.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544130.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020544127.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020544129.1
ncRNA:20   CGGGGGAGUUAGGGGAGG-UU   1
  *|||||||||||||||||-||
targets:2262   UCCCCCUCAAUCCCCUCCUAA   2282

3.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008654930.2
ncRNA:20   CGGGGGAG-UUAGGGGAGGUU   1
  *|||||||-||||||||||||
targets:80   UCCCCCUCGAAUCCCCUCCAA   100

3.0 PREDICTED: Zea mays abnormal spindle-like microcephaly-associated protein homolog (LOC103633234), mRNA NA coding protein psRNATarget
XM_020549567.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  **|||||||||||||||=||
targets:1067   AGCCCCUCAAUCCCCUCUAA   1086

2.5 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545634.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7606   GCACCCUCAAUCCCCUCUAA   7625

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020545628.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7756   GCACCCUCAAUCCCCUCUAA   7775

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020545630.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7911   GCACCCUCAAUCCCCUCUAA   7930

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020545629.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7911   GCACCCUCAAUCCCCUCUAA   7930

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020545631.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7876   GCACCCUCAAUCCCCUCUAA   7895

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020545626.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7911   GCACCCUCAAUCCCCUCUAA   7930

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545633.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  ||*||||||||||||||=||
targets:7903   GCACCCUCAAUCCCCUCUAA   7922

2.5 PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA NA coding protein psRNATarget
BT064254.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *==|=|||||||||||||||
targets:1644   UUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
NM_001349063.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *==|=|||||||||||||||
targets:1644   UUUCUCUCAAUCCCCUCCAA   1663

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
BT067571.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *==|=|||||||||||||||
targets:1631   UUUCUCUCAAUCCCCUCCAA   1650

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
XM_008649902.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *==|=|||||||||||||||
targets:1674   UUUCUCUCAAUCCCCUCCAA   1693

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT017317.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||||||||||||||||**
targets:68   CCCCCCUCAAUCCCCUCCUC   87

2.5 Zea mays clone EL01N0318H03.c mRNA sequence NA coding protein psRNATarget
HI403290.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|*|||||||||||||||
targets:70   UCUCACUCAAUCCCCUCCAA   89

2.0 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
LQ235420.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|*|||||||||||||||
targets:70   UCUCACUCAAUCCCCUCCAA   89

2.0 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|*|||||||||||||||
targets:70   UCUCACUCAAUCCCCUCCAA   89

2.0 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
EZ055746.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *=|*||||||||||||||||
targets:75   UUCACCUCAAUCCCCUCCAA   94

2.0 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
EU941872.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||*|||||||||=||||||
targets:95   UCCACCUCAAUCCUCUCCAA   114

2.5 Zea mays clone 1471472 mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *=|*||||||||||||||||
targets:41   UUCACCUCAAUCCCCUCCAA   60

2.0 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
BT069908.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|*|||||||||||||||
targets:256   ACUCACUCAAUCCCCUCCAA   275

2.0 Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds NA coding protein psRNATarget
NM_001176906.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=|*|||||||||||||||
targets:256   ACUCACUCAAUCCCCUCCAA   275

2.0 Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA NA coding protein psRNATarget
XM_008672733.2
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||*|||||||||=||||||
targets:2429   UCCACCUCAAUCCUCUCCAA   2448

2.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||||=|||||||*||||||
targets:3911   UCCCCUUCAAUCCACUCCAA   3930

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547122.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||*|||=||||||||||||
targets:291   UCCACCUUAAUCCCCUCCAA   310

2.5 PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547119.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *||*|||=||||||||||||
targets:399   UCCACCUUAAUCCCCUCCAA   418

2.5 PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545025.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|||*|||||||=|||||||
targets:329   ACCCACUCAAUCUCCUCCAA   348

2.5 PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA NA coding protein psRNATarget
EZ104544.1
ncRNA:20   CGGGGGAGUUAGGGGAGGUU   1
  *|=||*|||||||||||||=
targets:83   UCUCCGUCAAUCCCCUCCAG   102

3.0 TSA: Zea mays contig40201, mRNA sequence NA coding protein psRNATarget
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