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BaseInfo

ncRNA ID osa-miR1429-3p
Species Oryza sativa
Class miRNA
Genome position Chr8:2036953-2037072 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - GUUGCACGGGUUUGUAUGUUG - 22
Stem-loop(if miRNA)          U          U   U        ------------UU     U   -      GUG
GUAAUAUAC AAUCCGUGCA CCA CGUAUAUC              ACACG CAU GUGAAC   C
||||||||| |||||||||| ||| ||||||||              ||||| ||| ||||||
CGUUGUAUG UUGGGCACGU GGU GUGUAUGG              UGUGU GUA UACUUG   A
         U          U   -        UAAUUGUAAAUAUU     U   A      GCU
Stem-loop sequence GUAAUAUACUAAUCCGUGCAUCCAUCGUAUAUCUUACACGUCAUGUGAACGUGCAUCGGUUCAUAAUGUUGUGUUUAUAAAUGUUAAUGGUAUGUGUGGUUGCACGGGUUUGUAUGUUGC

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).
3 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).
4 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).