ncRNA ID | osa-miR1429-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:2036953-2037072 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 100 - GUAAUAUACUAAUCCGUGCAU - 120 |
Stem-loop(if miRNA) |
         U          U   U        ------------UU     U   -      GUG GUAAUAUAC AAUCCGUGCA CCA CGUAUAUC              ACACG CAU GUGAAC   C ||||||||| |||||||||| ||| ||||||||              ||||| ||| |||||| CGUUGUAUG UUGGGCACGU GGU GUGUAUGG              UGUGU GUA UACUUG   A          U          U   -        UAAUUGUAAAUAUU     U   A      GCU |
Stem-loop sequence | GUAAUAUACUAAUCCGUGCAUCCAUCGUAUAUCUUACACGUCAUGUGAACGUGCAUCGGUUCAUAAUGUUGUGUUUAUAAAUGUUAAUGGUAUGUGUGGUUGCACGGGUUUGUAUGUUGC |
1 | PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008). |
2 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |
3 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |
4 | PMID:19903869
"Rice MicroRNA effector complexes and targets"; Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y; Plant Cell. 21:3421-3435(2009). |