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BaseInfo

ncRNA ID	novel_zma_miR2749
Species	Zea mays
Class	miRNA
Genome position	Chr8:128626985-128627109 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	102 - CAUGGAUUAAUGGUGAAACGAACA - 125
Stem-loop(if miRNA)	--    -G     UC           U   G  GU       AAUAUA    G        UGAU   UUCG  UUAUU  UGAUCCAUGUG AUU GA  GUAUUGA      UUGG UUAAAUUU    U   ||||  |||||  ||||||||||| ||| ||  |||||||      |||| ||||||||    U   AAGC  AGUGG  AUUAGGUACAC UAA UU  CAUAACU      AGCC AAUUUAGG    A AC    AA     UA           C   G  AC       -----C    A        UAUU
Stem-loop sequence	UUCGGUUAUUUCUGAUCCAUGUGUAUUGGAGUGUAUUGAAAUAUAUUGGGUUAAAUUUUGAUUUAUUAUGGAUUUAAACCGACUCAAUACCAUUGAAUCCACAUGGAUUAAUGGUGAAACGAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY112376.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   |||*|||||||||||||||||||| targets:306   UGUCCGUUUCACCAUUAAUCCAUG   329 Target Full Sequence	0.0	Zea mays CL41055_1 mRNA sequence	NA	coding protein	psRNATarget
EZ095034.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   |||*|||||||||||||||||||| targets:98   UGUCCGUUUCACCAUUAAUCCAUG   121 Target Full Sequence	0.0	TSA: Zea mays contig30686, mRNA sequence	NA	coding protein	psRNATarget
XM_020542805.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   |||||*|||||||=|||||||||| targets:2456   UGUUCAUUUCACCGUUAAUCCAUG   2479 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542806.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   |||||*|||||||=|||||||||| targets:2456   UGUUCAUUUCACCGUUAAUCCAUG   2479 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542807.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   |||||*|||||||=|||||||||| targets:2456   UGUUCAUUUCACCGUUAAUCCAUG   2479 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT016884.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   ||||=|||||||||*||||||||| targets:171   UGUUUGUUUCACCAAUAAUCCAUG   194 Target Full Sequence	1.5	Zea mays clone Contig717 mRNA sequence	NA	coding protein	psRNATarget
AY110917.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   ||||=||||||||*|||||||||| targets:996   UGUUUGUUUCACCCUUAAUCCAUG   1019 Target Full Sequence	1.5	Zea mays CL4921_1 mRNA sequence	NA	coding protein	psRNATarget
AY111503.1	ncRNA:24   ACAAGCAAAGUGGUAAUUAGGUAC   1   ||||*||||||=|||||||||||| targets:75   UGUUGGUUUCAUCAUUAAUCCAUG   98 Target Full Sequence	1.5	Zea mays CL14541_1 mRNA sequence	NA	coding protein	psRNATarget