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BaseInfo

ncRNA ID	novel_zma_miR2742
Species	Zea mays
Class	miRNA
Genome position	Chr7:105863896-105863949 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	21
Mature sequence(if miRNA)	1 - UUGGAGGAGAUUGAGAGGAAA - 21
Stem-loop(if miRNA)	--       A         GA    UA   UUGGAGG GAUUGAGAG  AAAU  G   ||||||| |||||||||  ||||   AACCUCC CUAACUCUC  UUUA  U CU       C         UG    CU
Stem-loop sequence	UUGGAGGAGAUUGAGAGGAAAAUUAGUUCAUUUGUCUCUCAAUCCCCUCCAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544537.1	ncRNA:21   AAAGGAGA-GUUAGAGGAGGUU   1   *|||||||-||||||||||||| targets:667   CUUCCUCUUCAAUCUCCUCCAA   688 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103644203 (LOC103644203), mRNA	NA	coding protein	psRNATarget
EU947292.1	ncRNA:21   AAAGGAGA-GUUAGAGGAGGUU   1   **||||||-||||||||||||| targets:372   CCUCCUCUUCAAUCUCCUCCAA   393 Target Full Sequence	3.0	Zea mays clone 337490 mRNA sequence	NA	coding protein	psRNATarget
BT070129.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   *|*|||||||||||=|||||| targets:927   AUACCUCUCAAUCUUCUCCAA   947 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0100F12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349063.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   *||=|||||||||*||||||| targets:1643   AUUUCUCUCAAUCCCCUCCAA   1663 Target Full Sequence	2.5	Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA	NA	coding protein	psRNATarget
BT064254.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   *||=|||||||||*||||||| targets:1643   AUUUCUCUCAAUCCCCUCCAA   1663 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds	NA	coding protein	psRNATarget
BT067571.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   *||=|||||||||*||||||| targets:1630   AUUUCUCUCAAUCCCCUCCAA   1650 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649902.2	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   *||=|||||||||*||||||| targets:1673   AUUUCUCUCAAUCCCCUCCAA   1693 Target Full Sequence	2.5	PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085858.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   |*||||||||*|||||||||| targets:111   UCUCCUCUCACUCUCCUCCAA   131 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0073E19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196325.1	ncRNA:21   AAAGGAGAGUUAGAGGAGGUU   1   |*||||||||*|||||||||| targets:111   UCUCCUCUCACUCUCCUCCAA   131 Target Full Sequence	1.5	Zea mays uncharacterized LOC100501645 (LOC100501645), mRNA	NA	coding protein	psRNATarget