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BaseInfo

ncRNA ID	novel_zma_miR2735
Species	Zea mays
Class	miRNA
Genome position	Chr1:144877480-144877603 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	101 - UUGGAUCUAGAUCUAACGGAUCAA - 124
Stem-loop(if miRNA)	--A       U      U       GA AGAUACAAUUGUGGUUUGUUAGGGUUUUUUUUAU    GUCCGUU GAUCUG AUCCAAC  U                                  A    ||||||| |||||| |||||||  |                                  A    UAGGCAA CUAGAU UAGGUUG  C                                  A AAC       U      C       -U UUACAGUAUAAAUCGUGAAUUUGGGACCAUAUCG
Stem-loop sequence	AGUCCGUUUGAUCUGUAUCCAACGAUAGAUACAAUUGUGGUUUGUUAGGGUUUUUUUUAUAAAGCUAUACCAGGGUUUAAGUGCUAAAUAUGACAUUCUGUUGGAUCUAGAUCUAACGGAUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956751.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:861   UUGAUCCGUUAGAUCUAGAUCCAA   884 Target Full Sequence	0.0	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:679   UUGAUCCGUUAGAUCUAGAUCCAA   702 Target Full Sequence	0.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ242227.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2985353	NA	coding protein	psRNATarget
JB170558.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2559767	NA	coding protein	psRNATarget
HI410097.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||||||||||||||||||||||| targets:52   UUGAUCCGUUAGAUCUAGAUCCAA   75 Target Full Sequence	0.0	Sequence 8222 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235081.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2985353	NA	coding protein	psRNATarget
JB163419.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2559767	NA	coding protein	psRNATarget
HI402951.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2074227	NA	coding protein	psRNATarget
JB163412.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1076 from Patent EP2559767	NA	coding protein	psRNATarget
HI402958.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235088.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   |||=|=|||||||||||||||||= targets:10   UUGGUUCGUUAGAUCUAGAUCCAG   33 Target Full Sequence	2.0	Sequence 1083 from Patent EP2985353	NA	coding protein	psRNATarget
EU940990.1	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   *||=*|=*||=||||||||||||| targets:889   AUGGACUAUUGGAUCUAGAUCCAA   912 Target Full Sequence	3.0	Zea mays clone 1234117 mRNA sequence	NA	coding protein	psRNATarget
XM_008647143.2	ncRNA:24   AACUAGGCAAUCUAGAUCUAGGUU   1   **|=*||||*||||||||||||=| targets:3855   CGGGGCCGUCAGAUCUAGAUCCGA   3878 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626782 (LOC103626782), mRNA	NA	coding protein	psRNATarget