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BaseInfo

ncRNA ID novel_zma_miR2734
Species Zea mays
Class miRNA
Genome position Chr10:144159696-144159749 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 31 - UGUGUGUUAUACUGUUAAGAUGGA - 54
Stem-loop(if miRNA) --   -A     A        -   AUG
  CAU  UAAUA UAUAAUAU CGU   U
  |||  ||||| |||||||| |||
  GUA  AUUGU AUAUUGUG GUA   A
AG   GA     C        U   AAC
Stem-loop sequence CAUAUAAUAAUAUAAUAUCGUAUGUACAAAUGUGUGUUAUACUGUUAAGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541369.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |=|-||*|||||||||||||||||
targets:3362   UUC-UCAUAACAGUAUAACACACA   3384

1.0 PREDICTED: Zea mays uncharacterized LOC103633193 (LOC103633193), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667930.2
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||||||||||||||
targets:1363   UUUUUCAUAACAGUAUAACACACA   1386

1.0 PREDICTED: Zea mays uncharacterized LOC100272265 (LOC100272265), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001146754.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||||||||||||||
targets:1282   UUUUUCAUAACAGUAUAACACACA   1305

1.0 Zea mays uncharacterized LOC100272265 (LOC100272265), mRNA NA coding protein psRNATarget
BT038370.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||||||||||||||
targets:1282   UUUUUCAUAACAGUAUAACACACA   1305

1.0 Zea mays full-length cDNA clone ZM_BFb0229A02 mRNA, complete cds NA coding protein psRNATarget
EZ050590.1
ncRNA:24   AGGUAGA--AUUGUCAUAUUGUGUGU   1
  |==-|||--|||||||||||||||||
targets:71   UUU-UCUAAUAACAGUAUAACACACA   95

2.5 TSA: Zea mays contig51710, mRNA sequence NA coding protein psRNATarget
XM_020539424.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |=|-||*||||||||||||=||||
targets:1045   UUC-UCAUAACAGUAUAACGCACA   1067

2.5 PREDICTED: Zea mays uncharacterized LOC103629832 (LOC103629832), mRNA NA coding protein psRNATarget
XM_020543297.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3802   UUUUUCAUAACAAUAUAACACACA   3825

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020543292.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3789   UUUUUCAUAACAAUAUAACACACA   3812

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543305.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3741   UUUUUCAUAACAAUAUAACACACA   3764

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020543304.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3733   UUUUUCAUAACAAUAUAACACACA   3756

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020543294.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3701   UUUUUCAUAACAAUAUAACACACA   3724

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543299.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3698   UUUUUCAUAACAAUAUAACACACA   3721

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020543300.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3684   UUUUUCAUAACAAUAUAACACACA   3707

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020543295.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3674   UUUUUCAUAACAAUAUAACACACA   3697

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543302.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3658   UUUUUCAUAACAAUAUAACACACA   3681

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020543301.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3611   UUUUUCAUAACAAUAUAACACACA   3634

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020543298.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3574   UUUUUCAUAACAAUAUAACACACA   3597

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020543296.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3390   UUUUUCAUAACAAUAUAACACACA   3413

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543293.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3377   UUUUUCAUAACAAUAUAACACACA   3400

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020543303.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:3329   UUUUUCAUAACAAUAUAACACACA   3352

2.5 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103635325), transcript variant X12, mRNA NA coding protein psRNATarget
BT087453.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |=|-||*|||||*|||||||||||
targets:1480   UUC-UCAUAACAAUAUAACACACA   1502

2.5 Zea mays full-length cDNA clone ZM_BFb0082J04 mRNA, complete cds NA coding protein psRNATarget
BT062113.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |=|-||*|||||*|||||||||||
targets:919   UUC-UCAUAACAAUAUAACACACA   941

2.5 Zea mays full-length cDNA clone ZM_BFb0215N14 mRNA, complete cds NA coding protein psRNATarget
EU969446.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:891   UUUUUCAUAACAAUAUAACACACA   914

2.5 Zea mays clone 330360 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU949408.1
ncRNA:24   AGGUAGAAUUGUCAUAUUGUGUGU   1
  |==*||*|||||*|||||||||||
targets:313   UUUUUCAUAACAAUAUAACACACA   336

2.5 Zea mays clone 406723 mRNA sequence NA coding protein psRNATarget
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