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BaseInfo

ncRNA ID	novel_zma_miR2731
Species	Zea mays
Class	miRNA
Genome position	Chr7:21362488-21362714 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287164;SRR2287165
Length	24
Mature sequence(if miRNA)	204 - AUGAGAAAUGGGGUGGUGAUGGAU - 227
Stem-loop(if miRNA)	--     A       U                            A             A      A                  A     UUA               --   U   AUGAG AAUGGGG GGUGAUGGAUCAACCCAUUCUAUUCCAC AACCAAAUAAAAA GUGAGG GUGAGAAGAAGAUGGAUC UUUCA   CUCAAACCAAACACA  CUA A   ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||   |||||||||||||||  ||| A   UACUC UUACUCC CCACUACUUAGUUGGGUAAGAUAAGGUG UUGGUUUAUUUUU CACUCC CACUCUUCUUCUGCCUAG GGAGU   GAGUUUGGUUUGUGU  GAU U AA     A       C                            C             A      G                  C     UAG               AG   U
Stem-loop sequence	AUGAGAAAUGGGGUGGUGAUGGAUCAACCCAUUCUAUUCCACAAACCAAAUAAAAAAGUGAGGAGUGAGAAGAAGAUGGAUCAUUUCAUUACUCAAACCAAACACACUAUAAUUUAGGAUGUGUUUGGUUUGAGGAUUGAGGCGAUCCGUCUUCUUCUCACGCCUCACAUUUUUAUUUGGUUCGUGGAAUAGAAUGGGUUGAUUCAUCACCCCCUCAUUACUCAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001138281.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=|||=||||||||||| targets:1202   AUCUAUCAUCACUCCAUUUCUCAU   1225 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100193120), mRNA	NA	coding protein	psRNATarget
BT035296.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=|||=||||||||||| targets:1202   AUCUAUCAUCACUCCAUUUCUCAU   1225 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053K15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668926.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=|||=||||||||||| targets:1203   AUCUAUCAUCACUCCAUUUCUCAU   1226 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100193120), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649207.2	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=||||=|||||||||| targets:1491   AUCUAUCAUCACCUCAUUUCUCAU   1514 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649205.2	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=||||=|||||||||| targets:1582   AUCUAUCAUCACCUCAUUUCUCAU   1605 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088056.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=|||=||||||||||| targets:1328   AUCUAUCAUCACUCCAUUUCUCAU   1351 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0381E20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139098.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=||||=|||||||||| targets:1740   AUCUAUCAUCACCUCAUUUCUCAU   1763 Target Full Sequence	2.5	Zea mays F-box protein (LOC100194037), mRNA	NA	coding protein	psRNATarget
BT036460.1	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=||||=|||||||||| targets:1740   AUCUAUCAUCACCUCAUUUCUCAU   1763 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117E09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649206.2	ncRNA:24   UAGGUAGUGGUGGGGUAAAGAGUA   1   |||=||||=||||=|||||||||| targets:1865   AUCUAUCAUCACCUCAUUUCUCAU   1888 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X2, mRNA	NA	coding protein	psRNATarget