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BaseInfo

ncRNA ID	novel_zma_miR2730
Species	Zea mays
Class	miRNA
Genome position	Chr7:22565099-22565185 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715;SRR5451004
Length	24
Mature sequence(if miRNA)	64 - AUGUGGAUUGGAUGGUAUUGAGUC - 87
Stem-loop(if miRNA)	--            UG U       ----------------C  UUAAAUG   AUGUGGAUUGGA  G AUUGAGU                 GU       C   ||||||||||||  | |||||||                 ||       A   UACACUUAACCU  U UAACUCA                 AC       U GG            CU U       CCCUAACUCUACCUAAG  UGAACAG
Stem-loop sequence	AUGUGGAUUGGAUGGUAUUGAGUCGUUUAAAUGCAUGACAAGUCAGAAUCCAUCUCAAUCCCACUCAAUUUUCUCCAAUUCACAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551219.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||||||||||||||||| targets:289   GACUCAAUACCAUCCAAUCCACAU   312 Target Full Sequence	0.0	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
NM_001350737.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||||||=||||||||| targets:4051   GACUCAAUACCAUCUAAUCCACAU   4074 Target Full Sequence	1.5	Zea mays phospholipase D family protein (LOC100272416), mRNA	NA	coding protein	psRNATarget
BT054344.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||||||=|||||||||| targets:1129   GACUCAAUACCAUUCAAUCCACAU   1152 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152495.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||||||=|||||||||| targets:1129   GACUCAAUACCAUUCAAUCCACAU   1152 Target Full Sequence	1.5	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:105   GACUCAAUAUCAUCCAAUCCACAU   128 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:6358   GACUCAAUAUCAUCCAAUCCAUAU   6381 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:5943   GACUCAAUAUCAUCCAAUCCAUAU   5966 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:5881   GACUCAAUAUCAUCCAAUCCAUAU   5904 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654741.2	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||=||=|||||||||| targets:1877   GACUCAAUACUAUUCAAUCCACAU   1900 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654742.2	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||=||=|||||||||| targets:1813   GACUCAAUACUAUUCAAUCCACAU   1836 Target Full Sequence	2.5	PREDICTED: Zea mays protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC103633059), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ238013.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||=||=|||||||||| targets:74   GACUCAAUACUAUUCAAUCCACAU   97 Target Full Sequence	2.5	Sequence 4008 from Patent EP2985353	NA	coding protein	psRNATarget
HI405883.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||=||=|||||||||| targets:74   GACUCAAUACUAUUCAAUCCACAU   97 Target Full Sequence	2.5	Sequence 4008 from Patent EP2074227	NA	coding protein	psRNATarget
JB166344.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||=||=|||||||||| targets:74   GACUCAAUACUAUUCAAUCCACAU   97 Target Full Sequence	2.5	Sequence 4008 from Patent EP2559767	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *||||||||=|||||||||||||| targets:142   AACUCAAUAUCAUCCAAUCCACAU   165 Target Full Sequence	1.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *||||||||=|||||||||||||| targets:142   AACUCAAUAUCAUCCAAUCCACAU   165 Target Full Sequence	1.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *||||||||=|||||||||||||| targets:142   AACUCAAUAUCAUCCAAUCCACAU   165 Target Full Sequence	1.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   ||||||||||||*||||||||||| targets:1121   GACUCAAUACCAGCCAAUCCACAU   1144 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
NM_001143004.1	ncRNA:24   CUGA----GUUAUGGUAGGUUAGGUGUA   1   *|||----|||||||||||||||||||| targets:1403   AACUUUUCCAAUACCAUCCAAUCCACAU   1430 Target Full Sequence	0.0	Zea mays Sas10/Utp3/C1D family (pco144488), mRNA	NA	coding protein	psRNATarget
BT037007.1	ncRNA:24   CUGA----GUUAUGGUAGGUUAGGUGUA   1   *|||----|||||||||||||||||||| targets:1403   AACUUUUCCAAUACCAUCCAAUCCACAU   1430 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0151F19 mRNA, complete cds	NA	coding protein	psRNATarget
EU974368.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   **=||||||=|||||||||||||| targets:1244   UUUUCAAUAUCAUCCAAUCCACAU   1267 Target Full Sequence	1.0	Zea mays clone 447232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||||||*||||||||||=|||| targets:3592   CACUCAAUCCCAUCCAAUCUACAU   3615 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001159099.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=|||||||*||||||||||| targets:985   AACUUAAUACCACCCAAUCCACAU   1008 Target Full Sequence	1.5	Zea mays mitochondrial glycoprotein (LOC100286211), mRNA	NA	coding protein	psRNATarget
EU976164.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=|||||||*||||||||||| targets:985   AACUUAAUACCACCCAAUCCACAU   1008 Target Full Sequence	1.5	Zea mays clone 679349 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
AY106055.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=|||||||*||||||||||| targets:981   AACUUAAUACCACCCAAUCCACAU   1004 Target Full Sequence	1.5	Zea mays PCO115884 mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *||*||||*||||||||||||||| targets:553   CACCCAAUCCCAUCCAAUCCACAU   576 Target Full Sequence	1.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
HI405822.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   **=|||||*||||||||||||=|| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   **=|||||*||||||||||||=|| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
JB166283.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   **=|||||*||||||||||||=|| targets:90   UUUUCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:5895   AACUUAAACCCAUCCAAUCCACAU   5918 Target Full Sequence	2.0	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:4833   AACUUAAACCCAUCCAAUCCACAU   4856 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:4832   AACUUAAACCCAUCCAAUCCACAU   4855 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:4084   AACUUAAACCCAUCCAAUCCACAU   4107 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:4045   AACUUAAACCCAUCCAAUCCACAU   4068 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   *|||=||**||||||||||||||| targets:3932   AACUUAAACCCAUCCAAUCCACAU   3955 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||||| targets:272   AAUUUUUUCCAAUCCCAUCCAAUCCACAU   300 Target Full Sequence	1.0	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551501.1	ncRNA:24   CUGA--GUUAUGGUAGGUUAGGUGUA   1   *==|--||||*||||||||||||||| targets:1286   UGUUUCCAAUCCCAUCCAAUCCACAU   1311 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||||| targets:2492   AAUUUUUUCCAAUCCCAUCCAAUCCACAU   2520 Target Full Sequence	1.0	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   CUGAGUUAUGGUAGGUUAGGUGUA   1   **||||||*|||||||||||||*| targets:1445   CCCUCAAUCCCAUCCAAUCCACUU   1468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242244.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||||| targets:69   AAUUUUUUCCAAUCCCAUCCAAUCCACAU   97 Target Full Sequence	1.0	Sequence 8239 from Patent EP2985353	NA	coding protein	psRNATarget
JB170575.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||||| targets:69   AAUUUUUUCCAAUCCCAUCCAAUCCACAU   97 Target Full Sequence	1.0	Sequence 8239 from Patent EP2559767	NA	coding protein	psRNATarget
HI410114.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||||| targets:69   AAUUUUUUCCAAUCCCAUCCAAUCCACAU   97 Target Full Sequence	1.0	Sequence 8239 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:4241   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   4269 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:4145   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   4173 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3821   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3849 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3746   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3774 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3759   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3787 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3751   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3779 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3757   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3785 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3703   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3731 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:3679   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   3707 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
JB170105.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*=|||||||||||||| targets:90   AAUUUUUUCCAAUCUCAUCCAAUCCACAU   118 Target Full Sequence	2.0	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
HI409644.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*=|||||||||||||| targets:90   AAUUUUUUCCAAUCUCAUCCAAUCCACAU   118 Target Full Sequence	2.0	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241774.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*=|||||||||||||| targets:90   AAUUUUUUCCAAUCUCAUCCAAUCCACAU   118 Target Full Sequence	2.0	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237953.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:85   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3948 from Patent EP2985353	NA	coding protein	psRNATarget
JB166284.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:85   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3948 from Patent EP2559767	NA	coding protein	psRNATarget
HI405823.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:85   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   113 Target Full Sequence	2.5	Sequence 3948 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235432.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*|||||||||||||=| targets:79   AAUUUUUUCCAAUCCCAUCCAAUCCACGU   107 Target Full Sequence	2.5	Sequence 1427 from Patent EP2985353	NA	coding protein	psRNATarget
JB163763.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*|||||||||||||=| targets:79   AAUUUUUUCCAAUCCCAUCCAAUCCACGU   107 Target Full Sequence	2.5	Sequence 1427 from Patent EP2559767	NA	coding protein	psRNATarget
HI403302.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*|||||||||||||=| targets:79   AAUUUUUUCCAAUCCCAUCCAAUCCACGU   107 Target Full Sequence	2.5	Sequence 1427 from Patent EP2074227	NA	coding protein	psRNATarget
EZ076130.1	ncRNA:24   CUGA-----GUUAUGGUAGGUUAGGUGUA   1   *|=|-----||||*||||||||||||=|| targets:44   AAUUUUUUCCAAUCCCAUCCAAUCCAUAU   72 Target Full Sequence	2.5	TSA: Zea mays contig11767, mRNA sequence	NA	coding protein	psRNATarget