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BaseInfo

ncRNA ID	ath-miRf10035-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - ACUCGACCUGGGGGUCGAGUGA - NA
Stem-loop(if miRNA)	U   GG GA       G        A       GAGG    G AG  -G      ---A  GG   G A      C    U  GAU  U  UACUCGA UUCCAGGU GAGUGAC    UCGU U  AU  UCUGGC    AU  GAU A GUCACU GACC G  |||  |  ||||||| |||||||| |||||||    |||| |  ||  ||||||    ||  ||| | |||||| ||||  CUA  G  GUGAGCU GGGGUCCA CUCACUG    AGUA A  UA  AGACUG    UG  CUA U UAGUGA CUGG G G   GU GA       G        G       ---A    G GG  GA      GUAG  AG   G G      A    G
Stem-loop sequence	UGAUGGUGAUACUCGAGUUCCAGGUAGAGUGACGAGGUCGUGUAGAUGUCUGGCAAUGGGAUGAAGUCACUCGACCUGGGGGUCAAGUGAUGUGAUCGAGUGAUGGUCAGAAGAUGGAGAUGAAGUCACUCGACCUGGGGGUCGAGUGAGGUGAUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   AG-UGAGCUGGGGGUCCAGCUCA   1   ||-|||||||||||||||||||| targets:186   UCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *=|||||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *=|||||||||||||||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   |=|||||||||||*|||||||| targets:308   UUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   AG-UGAGCUGGGGGUCCAGCUCA   1   ||-|||||||||||*|||||||| targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   AG-UGAGCUGGGGGUCCAGCUCA   1   ||-|||||||||||*|||||||| targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   |||||||||||||*|||||||| targets:1571   UCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   ||||||||||||*||||||||| targets:1617   UCACUCGACCCCGAGGUCGAGU   1638 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:124   CCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *||||||||||||*|||||||| targets:90   CCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *|||||||||*||||||||||| targets:449   CCACUCGACCACCAGGUCGAGU   470 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   *|||||||||||*||||||||| targets:854   CCACUCGACCCCGAGGUCGAGU   875 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   |=||||*||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   |=||||*||||||*|||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   AGUGAGCUGGGGGUCCAGCUCA   1   |=||*||||||||*|||||||| targets:583   UUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget