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BaseInfo

ncRNA ID	novel_zma_miR2723
Species	Zea mays
Class	miRNA
Genome position	Chr7:81036689-81036740 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715;SRR2287165;SRR5451004;SRR2089698
Length	24
Mature sequence(if miRNA)	29 - UGGAGGGGAUUGAGGUGGAAAUAA - 52
Stem-loop(if miRNA)	--            A  U      AA   UGGAGGGGAUUG GG GGAAAU  A   |||||||||||| || ||||||   AUUUCCCUUAAC UC CCUUUA  C UA            A  U      AU
Stem-loop sequence	UGGAGGGGAUUGAGGUGGAAAUAAACUAAUUUCCUCUACAAUUCCCUUUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ055746.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   ||||||=||||||||||||||||| targets:70   UUAUUUUCACCUCAAUCCCCUCCA   93 Target Full Sequence	1.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
EU941872.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   ||||||||||||||||||=||||| targets:90   UUAUUUCCACCUCAAUCCUCUCCA   113 Target Full Sequence	1.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   ||||||=||||||||||||||||| targets:36   UUAUUUUCACCUCAAUCCCCUCCA   59 Target Full Sequence	1.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-||||||||||||||||=||||| targets:2423   UUCAUUUCCACCUCAAUCCUCUCCA   2447 Target Full Sequence	1.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-|||||=||||||||||=||||| targets:830   UUCAUUUCUACCUCAAUCCUCUCCA   854 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-|||||=||||||||||=||||| targets:1140   UUCAUUUCUACCUCAAUCCUCUCCA   1164 Target Full Sequence	2.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-|||||=||||||||||=||||| targets:1152   UUCAUUUCUACCUCAAUCCUCUCCA   1176 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ071161.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*|||||=|||||||||||=|||| targets:83   UAAUUUCUACCUCAAUCCCUUCCA   106 Target Full Sequence	2.5	TSA: Zea mays contig06798, mRNA sequence	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   *||*||||||||=||||||||||| targets:286   CUAAUUCCACCUUAAUCCCCUCCA   309 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   *||*||||||||=||||||||||| targets:394   CUAAUUCCACCUUAAUCCCCUCCA   417 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-||||||*||||||||||||||= targets:79   UUCAUUUCCCCCUCAAUCCCCUCCG   103 Target Full Sequence	2.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   |||-|||||*||||||||||||||= targets:2144   UUAAUUUCCCCCUCAAUCCCCUCCG   2168 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*||||||*|||||||||||||=| targets:1793   UCAUUUCCCCCUCAAUCCCCUCUA   1816 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666284.2	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   **||||||||=||||||||*|||| targets:3276   CCAUUUCCACUUCAAUCCCAUCCA   3299 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666283.2	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   **||||||||=||||||||*|||| targets:3359   CCAUUUCCACUUCAAUCCCAUCCA   3382 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*||||||*=|||||||||||||= targets:49   UAAUUUCCUUCUCAAUCCCCUCCG   72 Target Full Sequence	3.0	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*||||||*=|||||||||||||= targets:49   UAAUUUCCUUCUCAAUCCCCUCCG   72 Target Full Sequence	3.0	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*||||||*=|||||||||||||= targets:49   UAAUUUCCUUCUCAAUCCCCUCCG   72 Target Full Sequence	3.0	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*|||||=*=|||||||||||||| targets:1458   UAAUUUCUCUCUCAAUCCCCUCCA   1481 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
BT084379.2	ncRNA:24   AA-UAAAGGUGGAGUUAGGGGAGGU   1   ||-||||||||*||||||||*|||| targets:247   UUCAUUUCCACAUCAAUCCCAUCCA   271 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0107D05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:24   AAU-AAAGGUGGAGUUAGGGGAGGU   1   *||-|||||*||||||||||||||* targets:2256   CUAGUUUCCCCCUCAAUCCCCUCCU   2280 Target Full Sequence	2.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ104544.1	ncRNA:24   AAUAAAGGUGGAGUUAGGGGAGGU   1   |*|||||=*|*||||||||||||| targets:78   UAAUUUCUCCGUCAAUCCCCUCCA   101 Target Full Sequence	3.0	TSA: Zea mays contig40201, mRNA sequence	NA	coding protein	psRNATarget