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BaseInfo

ncRNA ID novel_zma_miR2721
Species Zea mays
Class miRNA
Genome position Chr7:84167537-84167585 [-]
Reference genome RefGen_v4
Source SRR2089713
Length 19
Mature sequence(if miRNA) 31 - UCAGAUCCUGGGUUCGACU - 49
Stem-loop(if miRNA) --   G U      -    A     
  UCA A CCUGGG UUCG CUCCCC
  ||| | |||||| |||| |||||G
  GGU U GGACUU AAGC GAGGGU
UU   G U      U    -     
Stem-loop sequence UCAGAUCCUGGGUUCGACUCCCCGUGGGAGCGAAUUUCAGGUUGUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU968143.1
ncRNA:19   UCAGCUUGGGUCCUAGACU   1
  ||||||||||||||*||||
targets:262   AGUCGAACCCAGGACCUGA   280

1.5 Zea mays clone 315363 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001165693.1
ncRNA:19   UCAGCUUGGGUCCUAGACU   1
  ||||||||||||||*||||
targets:1005   AGUCGAACCCAGGACCUGA   1023

1.5 Zea mays uncharacterized LOC100304248 (LOC100304248), mRNA NA coding protein psRNATarget
BT060590.1
ncRNA:19   UCAGCUUGGGUCCUAGACU   1
  ||||||||||||||*||||
targets:1005   AGUCGAACCCAGGACCUGA   1023

1.5 Zea mays full-length cDNA clone ZM_BFb0019K01 mRNA, complete cds NA coding protein psRNATarget
XM_020552812.1
ncRNA:19   UCAGCUUGGGUCCUAGACU   1
  ||||||||||||||*||||
targets:932   AGUCGAACCCAGGACCUGA   950

1.5 PREDICTED: Zea mays nucleolin (LOC103654496), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020552812.1
ncRNA:19   UCAGCUUGGGUCCUAGACU   1
  ||||||||||||||*||||
targets:1539   AGUCGAACCCAGGACCUGA   1557

1.5 PREDICTED: Zea mays nucleolin (LOC103654496), transcript variant X2, mRNA NA coding protein psRNATarget