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BaseInfo

ncRNA ID novel_zma_miR2715
Species Zea mays
Class miRNA
Genome position Chr1:129540332-129540477 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 1 - AAUACAGCUUAUUUUCGUCGGCCC - 24
Stem-loop(if miRNA) --AA    -GC                -       CAC      AUAUUUCC            -   GCCG   AA
    UACA   UUAUUUUCGUCGGCCC CGGGGCC   GAAAAU        UAUUUUCGUGGG CAG    ACG  A
    ||||   |||||||||||||||| |||||||   ||||||        |||||||||||| |||    |||
    AUGU   AAUAAAAGCAGCCGGG GCCCUGG   CUUUUA        AUAAAAGCACCC GUC    UGU  A
UUUA    AUC                A       CUA      --AACCGA            A   ---A   AU
Stem-loop sequence AAUACAGCUUAUUUUCGUCGGCCCCGGGGCCCACGAAAAUAUAUUUCCUAUUUUCGUGGGCAGGCCGACGAAAAUAUGUACUGACCCACGAAAAUAAGCCAAAUUUUCAUCGGUCCCGAGGGCCGACGAAAAUAACUAUGUAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042581.1
ncRNA:24   CCCGGCUGCUUUUAUUCGACAUAA   1
  *||||||||||||||||||*||||
targets:490   AGGCCGACGAAAAUAAGCUAUAUU   513

1.5 Zea mays full-length cDNA clone ZM_BFb0345H15 mRNA, complete cds NA coding protein psRNATarget