ncRNA ID | osa-miR2275a |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:1204975-1205135 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 97 - UUUGGUUUCCUCCAAUAUCUCA - 118 |
Stem-loop(if miRNA) |
      G   --G      CAAAC   AAUC       GU     U      -     U GG          -------A    AG AGCUUA CUA   GCAUCA     CAU    UUUGGCA  UGAAU UGAGGU UUGGA G  ACCAAAUCUU        CUGC  A |||||| |||   ||||||     |||    |||||||  ||||| |||||| ||||| |  ||||||||||        |||| UCGAGU GAU   CGUGGU     GUG    AGACUGU  ACUUG ACUCUA AACCU C  UGGUUUAGAA        GACG  C       -   UAA      AAUAA   --AC       UG     U      U     C UU          CGCAAUUA    UU |
Stem-loop sequence | AGCUUAGCUAGGCAUCACAAACCAUAAUCUUUGGCAGUUGAAUUUGAGGUUUGGAUGGGACCAAAUCUUACUGCAGACUUGCAGAUUAACGCAAGAUUUGGUUUCCUCCAAUAUCUCAUGUUCAGUUGUCAGACAGUGAAUAAUGGUGCAAUUAGUGAGCU |
1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |