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BaseInfo

ncRNA ID osa-miR2275a
Species Oryza sativa
Class miRNA
Genome position Chr8:1204975-1205135 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 97 - UUUGGUUUCCUCCAAUAUCUCA - 118
Stem-loop(if miRNA)       G   --G      CAAAC   AAUC       GU     U      -     U GG          -------A    AG
AGCUUA CUA   GCAUCA     CAU    UUUGGCA  UGAAU UGAGGU UUGGA G  ACCAAAUCUU        CUGC  A
|||||| |||   ||||||     |||    |||||||  ||||| |||||| ||||| |  ||||||||||        ||||
UCGAGU GAU   CGUGGU     GUG    AGACUGU  ACUUG ACUCUA AACCU C  UGGUUUAGAA        GACG  C
      -   UAA      AAUAA   --AC       UG     U      U     C UU          CGCAAUUA    UU
Stem-loop sequence AGCUUAGCUAGGCAUCACAAACCAUAAUCUUUGGCAGUUGAAUUUGAGGUUUGGAUGGGACCAAAUCUUACUGCAGACUUGCAGAUUAACGCAAGAUUUGGUUUCCUCCAAUAUCUCAUGUUCAGUUGUCAGACAGUGAAUAAUGGUGCAAUUAGUGAGCU

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).