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BaseInfo

ncRNA ID novel_zma_miR2709
Species Zea mays
Class miRNA
Genome position Chr10:59319138-59319263 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647343
Length 24
Mature sequence(if miRNA) 1 - AAAUCUUAAGAUCUUUUUGGUGGA - 24
Stem-loop(if miRNA) --       A         U                                     -GU   C
  AAAUCUU AGAUCUUUU GGUGGAUAGUUUACGUGGGUAUUGUUGUAAGCCGUCG   UGC C
  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||   |||
  UUUAGAA UCUAGAAAA UCACCUAUCAAAUGCACCCAUAACAACAUUUGGCAGC   GCG G
UU       C         -                                     GUU   U
Stem-loop sequence AAAUCUUAAGAUCUUUUUGGUGGAUAGUUUACGUGGGUAUUGUUGUAAGCCGUCGGUUGCCCGUGCGUUGCGACGGUUUACAACAAUACCCACGUAAACUAUCCACUAAAAGAUCUCAAGAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943671.1
ncRNA:24   AGGUGGUUUUUCUAGAAUUCUAAA   1
  ||||||||||||||||||||||||
targets:996   UCCACCAAAAAGAUCUUAAGAUUU   1019

0.0 Zea mays clone 1675716 mRNA sequence NA coding protein psRNATarget
EU948769.1
ncRNA:24   AGGUGGUUUUUCUAGAAUUCUAAA   1
  |=||**||||||||||*|||||||
targets:1362   UUCAGAAAAAAGAUCUCAAGAUUU   1385

2.5 Zea mays clone 384376 mRNA sequence NA coding protein psRNATarget