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BaseInfo

ncRNA ID	novel_zma_miR2708
Species	Zea mays
Class	miRNA
Genome position	Chr6:77363590-77363782 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR1997865
Length	20
Mature sequence(if miRNA)	1 - AAAUGGAUUUCCACUGGCGG - 20
Stem-loop(if miRNA)	--    GG                     -UAAA                                     AA    AGAU             AAU   AAAU  AUUUCCACUGGCGGUUGUCUU     AACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUU  GUUA    AACCGCCAGUGGA   C   ||||  |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||  ||||    |||||||||||||   UUUG  UAAAGGUGACCGCCAAUAGAA     UUGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAA  CAAU    UUGGCGGUCACUU   A CC    GA                     UUGUG                                     CA    GUGU             GUA
Stem-loop sequence	AAAUGGAUUUCCACUGGCGGUUGUCUUUAAAAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUAAGUUAAGAUAACCGCCAGUGGAAAUCAAUGUUCACUGGCGGUUUGUGUAACACAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUGUGUUAAGAUAACCGCCAGUGGAAAUAGGUUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069194.2	ncRNA:20   GGCGGUCACCUUUAGGUAAA   1   ||||||||||||||*||||| targets:856   CCGCCAGUGGAAAUGCAUUU   875 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176701.1	ncRNA:20   GGCGGUCACCUUUAGGUAAA   1   ||||||||||||||*||||| targets:856   CCGCCAGUGGAAAUGCAUUU   875 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA	NA	coding protein	psRNATarget
XM_020541755.1	ncRNA:20   GGCGGUCACCUUUAGGUAAA   1   ||||**|||||||||||||* targets:740   CCGCGCGUGGAAAUCCAUUG   759 Target Full Sequence	3.0	PREDICTED: Zea mays nascent polypeptide-associated complex subunit alpha, muscle-specific form-like (LOC103634400), mRNA	NA	coding protein	psRNATarget
XM_020550903.1	ncRNA:20   GGCGGUCACCUUUAGGUAAA   1   ||||**|||||||||||||* targets:4172   CCGCGCGUGGAAAUCCAUUG   4191 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109945102 (LOC109945102), mRNA	NA	coding protein	psRNATarget