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BaseInfo

ncRNA ID novel_zma_miR2707
Species Zea mays
Class miRNA
Genome position Chr6:37259282-37259343 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 1 - AGGAUUGGAGUGGAUUGAGGGGGA - 24
Stem-loop(if miRNA) --          U             A  UA
  AGGAUUGGAG GGAUUGAGGGGGA AU  G
  |||||||||| ||||||||||||| ||
  UCCUAGCCUC CCUAACUCCCCCU UA  U
UC          C             C  CU
Stem-loop sequence AGGAUUGGAGUGGAUUGAGGGGGAAAUUAGUUCAUCUCCCCCUCAAUCCCCUCCGAUCCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163954.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
XM_020547439.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |||||=|||||||||||||||||*
targets:3911   UCCCCUUCAAUCCACUCCAAUCCC   3934

2.0 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  ||=|=||||||||*||||||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |==||||=|||||*||||||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
LQ238263.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

1.0 Sequence 4258 from Patent EP2985353 NA coding protein psRNATarget
JB166594.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

1.0 Sequence 4258 from Patent EP2559767 NA coding protein psRNATarget
HI406133.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

1.0 Sequence 4258 from Patent EP2074227 NA coding protein psRNATarget
LQ239083.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

1.0 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
JB167414.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

1.0 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
HI406953.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

1.0 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
EU943240.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:573   ACCACCUCAAUCCACUCCAAUCCA   596

1.0 Zea mays clone 1589496 mRNA sequence NA coding protein psRNATarget
NM_001152975.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:811   ACCCACUCAAUCCACUCCAAUCCA   834

1.0 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
BT055408.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:811   ACCCACUCAAUCCACUCCAAUCCA   834

1.0 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
EU965489.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134

1.0 Zea mays clone 286392 mRNA sequence NA coding protein psRNATarget
XM_008649521.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:863   ACCCACUCAAUCCACUCCAAUCCA   886

1.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *|||*||||||||||||||||||*
targets:892   ACCCACUCAAUCCACUCCAAUCCA   915

1.0 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667020.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  *||*|||||||||||||||||||*
targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103

1.0 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |=|*|||||||||*||||||||||
targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |=|*|||||||||*||||||||||
targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
AY111447.2
ncRNA:24   AGGG------GGAGUUAGGUGAGGUUAGGA   1
  ||=|------=||||||||||||||||||*
targets:345   UCUCAAUACAUCUCAAUCCACUCCAAUCCC   374

1.0 Zea mays CL859_2 mRNA sequence NA coding protein psRNATarget
BT067545.1
ncRNA:24   AGGG------GGAGUUAGGUGAGGUUAGGA   1
  ||=|------=||||||||||||||||||*
targets:1761   UCUCAAUACAUCUCAAUCCACUCCAAUCCC   1790

1.0 Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds NA coding protein psRNATarget
NM_001137799.1
ncRNA:24   AGGG------GGAGUUAGGUGAGGUUAGGA   1
  ||=|------=||||||||||||||||||*
targets:1942   UCUCAAUACAUCUCAAUCCACUCCAAUCCC   1971

1.0 Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA NA coding protein psRNATarget
BT034601.1
ncRNA:24   AGGG------GGAGUUAGGUGAGGUUAGGA   1
  ||=|------=||||||||||||||||||*
targets:1942   UCUCAAUACAUCUCAAUCCACUCCAAUCCC   1971

1.0 Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds NA coding protein psRNATarget
XM_008672733.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |||*|||||||||*|||||||||*
targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452

2.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
XM_008667123.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |*=*|||||||||||||||||||*
targets:2376   UGUACCUCAAUCCACUCCAAUCCA   2399

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667124.2
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |*=*|||||||||||||||||||*
targets:2398   UGUACCUCAAUCCACUCCAAUCCA   2421

1.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020548088.1
ncRNA:24   AGGGGGAGUUAGGUGAGGUUAGGA   1
  |*|*||||||||||||=||||||*
targets:5050   UACACCUCAAUCCACUUCAAUCCC   5073

2.5 PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA NA coding protein psRNATarget
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