Search result

BaseInfo

ncRNA ID	novel_zma_miR2705
Species	Zea mays
Class	miRNA
Genome position	Chr6:21031512-21031571 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - GGUCUGUUUGGUUGGGAUGUGGCU - 24
Stem-loop(if miRNA)	--AG    UU     UU       AG  CG     ACAU  CAGCU  ACGGGCU  UG  A     ||||  |||||  |||||||  ||  C     UGUA  GUUGG  UGUCUGG  AC  A UCGG    GG     UU       -G  UU
Stem-loop sequence	AGACAUUUCAGCUUUACGGGCUAGUGCGACAUUCAGGGUCUGUUUGGUUGGGAUGUGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945925.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:887   AGCCACAGCCCAACCAAACAGACC   910 Target Full Sequence	1.0	Zea mays clone 290258 mRNA sequence	NA	coding protein	psRNATarget
NM_001150116.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:958   AGCCACAGCCCAACCAAACAGACC   981 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276292 (umc2168), mRNA	NA	coding protein	psRNATarget
EU961185.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:958   AGCCACAGCCCAACCAAACAGACC   981 Target Full Sequence	1.0	Zea mays clone 233237 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547224.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:18   AGCCACAACCCAACCAAACAGACC   41 Target Full Sequence	1.0	PREDICTED: Zea mays mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS2-like (LOC103643125), mRNA	NA	coding protein	psRNATarget
EU973149.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:1115   AGCCACAGCCCAACCAAACAGACC   1138 Target Full Sequence	1.0	Zea mays clone 394137 mRNA sequence	NA	coding protein	psRNATarget
BT061539.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   |||||||*|||||||||||||||| targets:1247   AGCCACAGCCCAACCAAACAGACC   1270 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0156G14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   UCGGUGUAGGGUUGGUUUGUCUGG   1   ||=||||*|||||||||||||||| targets:2487   AGUCACAGCCCAACCAAACAGACC   2510 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget