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BaseInfo

ncRNA ID	novel_zma_miR2704
Species	Zea mays
Class	miRNA
Genome position	Chr6:21084410-21084500 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	23
Mature sequence(if miRNA)	69 - CCAUGUGGAUUGGAGUGGAUUGG - 91
Stem-loop(if miRNA)	--            GA U     G   -  CA         AUUUUA   CCAUGUGGAUUG  G GGAUU GGU GG  UUGAGUCUG      A   ||||||||||||  | ||||| ||| ||  |||||||||   GGUACACCUAAC  C CCUAA UCA CC  AAUUUAGAU      C UA            UG -     A   A  -A         AUCAUU
Stem-loop sequence	CCAUGUGGAUUGGAGUGGAUUGGGUGGCAUUGAGUCUGAUUUUAACUUACUAUAGAUUUAAACCAACUAAAUCCCGUCAAUCCACAUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167414.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:11   UCAAUCCACUCCAAUCCAUAUGG   33 Target Full Sequence	1.5	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
HI406953.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:11   UCAAUCCACUCCAAUCCAUAUGG   33 Target Full Sequence	1.5	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:11   UCAAUCCACUCCAAUCCAUAUGG   33 Target Full Sequence	1.5	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:817   UCAAUCCACUCCAAUCCAUAUGG   839 Target Full Sequence	1.5	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:817   UCAAUCCACUCCAAUCCAUAUGG   839 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:869   UCAAUCCACUCCAAUCCAUAUGG   891 Target Full Sequence	1.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =|||||||||||||||||=|||| targets:898   UCAAUCCACUCCAAUCCAUAUGG   920 Target Full Sequence	1.5	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238567.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||*||||||||||||||| targets:74   CCAAUCCCCUCCAAUCCACAUGG   96 Target Full Sequence	1.0	Sequence 4562 from Patent EP2985353	NA	coding protein	psRNATarget
HI406437.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||*||||||||||||||| targets:74   CCAAUCCCCUCCAAUCCACAUGG   96 Target Full Sequence	1.0	Sequence 4562 from Patent EP2074227	NA	coding protein	psRNATarget
JB166898.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||*||||||||||||||| targets:74   CCAAUCCCCUCCAAUCCACAUGG   96 Target Full Sequence	1.0	Sequence 4562 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||||||||||||||=||* targets:2382   UCAAUCCACUCCAAUCCACGUGU   2404 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||||||||||||||=||* targets:2404   UCAAUCCACUCCAAUCCACGUGU   2426 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542807.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||*||||=|||||||||||| targets:2542   CCAAUACACUUCAAUCCACAUGG   2564 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542806.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||*||||=|||||||||||| targets:2542   CCAAUACACUUCAAUCCACAUGG   2564 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542805.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||*||||=|||||||||||| targets:2542   CCAAUACACUUCAAUCCACAUGG   2564 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g66520 (LOC103636848), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:445   UCAAUCCCCUCCAAUCCAUAUGG   467 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:699   UCAAUCCCCUCCAAUCCAUAUGG   721 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:898   UCAAUCCCCUCCAAUCCAUAUGG   920 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:846   UCAAUCCCCUCCAAUCCAUAUGG   868 Target Full Sequence	2.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866 Target Full Sequence	2.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:844   UCAAUCCCCUCCAAUCCAUAUGG   866 Target Full Sequence	2.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:845   UCAAUCCCCUCCAAUCCAUAUGG   867 Target Full Sequence	2.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:917   UCAAUCCCCUCCAAUCCAUAUGG   939 Target Full Sequence	2.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
BT017369.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||*|||||=||||||||||| targets:200   UCAAUACACUCUAAUCCACAUGG   222 Target Full Sequence	2.5	Zea mays clone EL01N0324H03.c mRNA sequence	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:22   UCAAUCCCCUCCAAUCCAUAUGG   44 Target Full Sequence	2.5	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:1980   UCAAUCCCCUCCAAUCCAUAUGG   2002 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:1630   UCAAUCCCCUCCAAUCCAUAUGG   1652 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||||||=|||| targets:301   UCAAUCCCCUCCAAUCCAUAUGG   323 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EZ088914.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   ||==|*||||||||||||=|||| targets:68   CCGGUACACUCCAAUCCAUAUGG   90 Target Full Sequence	2.5	TSA: Zea mays contig24560, mRNA sequence	NA	coding protein	psRNATarget
JB170575.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:77   CCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 8239 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242244.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:77   CCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 8239 from Patent EP2985353	NA	coding protein	psRNATarget
HI410114.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:77   CCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 8239 from Patent EP2074227	NA	coding protein	psRNATarget
EZ077876.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||*|||||||||||||||*| targets:73   CCAAUACACUCCAAUCCACAUAG   95 Target Full Sequence	2.5	TSA: Zea mays contig13515, mRNA sequence	NA	coding protein	psRNATarget
EZ110342.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||*|||*||||||||||||| targets:12   CCAAUACACACCAAUCCACAUGG   34 Target Full Sequence	2.0	TSA: Zea mays contig46002, mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:556   CCAAUCCCAUCCAAUCCACAUGG   578 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
BT016884.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   ==|||*||||=|||||||||||| targets:247   UUAAUACACUUCAAUCCACAUGG   269 Target Full Sequence	2.5	Zea mays clone Contig717 mRNA sequence	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   ==|||||*||||||||||=|||| targets:1160   UUAAUCCCCUCCAAUCCAUAUGG   1182 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   ==|||||*||||||||||=|||| targets:1198   UUAAUCCCCUCCAAUCCAUAUGG   1220 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551501.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:1291   CCAAUCCCAUCCAAUCCACAUGG   1313 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   |||||||**|||||||||||||| targets:280   CCAAUCCCAUCCAAUCCACAUGG   302 Target Full Sequence	2.0	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||*|||||||| targets:262   UCAAUCCCCUCCAACCCACAUGG   284 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:23   GGUUAGGUGAGGUUAGGUGUACC   1   =||||||*||||||*|||||||| targets:262   UCAAUCCCCUCCAACCCACAUGG   284 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget