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BaseInfo

ncRNA ID	novel_zma_miR2702
Species	Zea mays
Class	miRNA
Genome position	Chr6:30887002-30887088 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	1 - ACUCUGUAGCAACGCACGAGCAUA - 24
Stem-loop(if miRNA)	--                 -  UAA    CAU   U      AA   UGCUCGUGUGUUGCUAU GA   AAUA   UAA AUACAA  A   ||||||||||||||||| ||   ||||   ||| ||||||   ACGAGCACGCAACGAUG CU   UUAU   AUU UGUGUU  A AU                 U  CAA    AAU   U      AU
Stem-loop sequence	UGCUCGUGUGUUGCUAUGAUAAAAUACAUUAAUAUACAAAAAAUAUUGUGUUUUAUAAUAUUAACUCUGUAGCAACGCACGAGCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041253.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   |||||*|||||||||||||=|||| targets:227   UAUGCCCGUGCGUUGCUACGGAGU   250 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0016P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT034628.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   |||||*|||||||||||||=|||| targets:970   UAUGCCCGUGCGUUGCUACGGAGU   993 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137820.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   |||||*|||||||||||||=|||| targets:970   UAUGCCCGUGCGUUGCUACGGAGU   993 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192605 (LOC100192605), mRNA	NA	coding protein	psRNATarget
XM_008653251.2	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   |||||*|||||||||||||=|||| targets:2018   UAUGCCCGUGCGUUGCUACGGAGU   2041 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283163 (pco077553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148091.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   *||||*|||||||||||||||||| targets:1328   AAUGCCCGUGCGUUGCUACAGAGU   1351 Target Full Sequence	1.0	Zea mays two-component response regulator ARR3 (LOC100273679), mRNA	NA	coding protein	psRNATarget
BT041618.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   *||||*|||||||||||||||||| targets:1328   AAUGCCCGUGCGUUGCUACAGAGU   1351 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0019A23 mRNA, complete cds	NA	coding protein	psRNATarget
EU940751.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   *||||*|||||||||||||=|||| targets:377   AAUGCCCGUGCGUUGCUACGGAGU   400 Target Full Sequence	2.5	Zea mays clone 1061917 mRNA sequence	NA	coding protein	psRNATarget
XM_020537679.1	ncRNA:24   AUACGAGCACGCAACGAUGUCUCA   1   |||||*||||||||||||||||*| targets:801   UAUGCCCGUGCGUUGCUACAGAAU   824 Target Full Sequence	2.5	PREDICTED: Zea mays probable ubiquitin-conjugating enzyme E2 25 (LOC103628268), mRNA	NA	coding protein	psRNATarget