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BaseInfo

ncRNA ID novel_zma_miR2698
Species Zea mays
Class miRNA
Genome position Chr6:42140341-42140406 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2089705
Length 20
Mature sequence(if miRNA) 1 - AUCGGAGUAGCGCAGCGGAA - 20
Stem-loop(if miRNA) -U    -  UG  ---- GCGGAAGGUGUGGGUGCC
  CGCC UG  CC    U                  G
  |||| ||  ||    |
  GGCG CG  CG    G                  C
AA    A  --  AUGA GCUAGUGAGGUGUGCGGG
Stem-loop sequence UCGCCUGUGCCUGCGGAAGGUGUGGGUGCCGCGGGCGUGUGGAGUGAUCGGAGUAGCGCAGCGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008658889.2
ncRNA:20   AAGGCGACGCGAUGAGGCUA   1
  |||||||||*|||||||||*
targets:1869   UUCCGCUGCUCUACUCCGAG   1888

2.5 PREDICTED: Zea mays U-box domain-containing protein 16 (LOC103636544), mRNA NA coding protein psRNATarget
EZ079624.1
ncRNA:20   AAGGCGACGCGAUGAGGCUA   1
  *|*|*=||||||||||||||
targets:111   CUACUUUGCGCUACUCCGAU   130

3.0 TSA: Zea mays contig15263, mRNA sequence NA coding protein psRNATarget