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BaseInfo

ncRNA ID	novel_zma_miR2697
Species	Zea mays
Class	miRNA
Genome position	Chr6:49939910-49940088 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715;SRR2089700
Length	20
Mature sequence(if miRNA)	1 - CGGGAAGUGGAGGCGUAGAA - 20
Stem-loop(if miRNA)	--G           -C     -   G        -  A  UCUUC    --  -         AC A C    A   A   -     GUCG   C U    UAUGCUUCCAU  UUCGG GUC CGACAGUG GG GU     AUGA  CU UGGUCGAUG  G G UGCG GUC CCA CGAGC    AGG G C    |||||||||||  ||||| ||| |||||||| || ||     ||||  || |||||||||  | | |||| ||| ||| |||||    ||| | G    AUGCGGAGGUG  GGGCC CAG GUUGUUAC CC CA     UACU  GA ACCAGUUGC  C C ACGC UAG GGU GCUCG    UCC C G AAG           AA     G   -        A  -  -CUCA    CC  G         -- - A    G   C   A     ---A   C A
Stem-loop sequence	GUAUGCUUCCAUCUUCGGGUCGCGACAGUGGGAGUUCUUCAUGACUUGGUCGAUGACGAGCUGCGAGUCACCACGAGCGUCGAGGCGUCGGACCCCUAGCUCGAUGGCGAUGCGCAACCCGUUGACCAGAGCCUCAUACUCACCCACAUUGUUGGACGCCGGGAAGUGGAGGCGUAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940929.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   |*|||||||||||=|||||| targets:1957   UGCUACGCCUCCAUUUCCCG   1976 Target Full Sequence	2.5	Zea mays clone 1215420 mRNA sequence	NA	coding protein	psRNATarget
EU952296.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   ||||||||||||||*||||* targets:30   UUCUACGCCUCCACCUCCCU   49 Target Full Sequence	2.5	Zea mays clone 1276536 NADH-ubiquinone oxidoreductase 23 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
EU964090.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   ||||||||||||||*||||* targets:45   UUCUACGCCUCCACCUCCCU   64 Target Full Sequence	2.5	Zea mays clone 275793 NADH-ubiquinone oxidoreductase 23 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660550.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*||||||||=||||||| targets:86   CUCCACGCCUCCGCUUCCCG   105 Target Full Sequence	2.5	PREDICTED: Zea mays putative lysine-specific demethylase ELF6 (LOC100381553), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660549.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*||||||||=||||||| targets:221   CUCCACGCCUCCGCUUCCCG   240 Target Full Sequence	2.5	PREDICTED: Zea mays putative lysine-specific demethylase ELF6 (LOC100381553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944448.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||||||||||||*||||* targets:7   CUCUACGCCUCCACCUCCCU   26 Target Full Sequence	2.5	Zea mays clone 218916 mRNA sequence	NA	coding protein	psRNATarget
AY111683.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||||||||||||*||||* targets:17   CUCUACGCCUCCACCUCCCU   36 Target Full Sequence	2.5	Zea mays CL4677_1 mRNA sequence	NA	coding protein	psRNATarget
EU970066.1	ncRNA:20   AAGAU-GCGGAGGUGAAGGGC   1   *||*|-||||||||||||||| targets:469   GUCAAGCGCCUCCACUUCCCG   489 Target Full Sequence	3.0	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
EZ085347.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:72   CUCGACGGCUCCACUUCCCG   91 Target Full Sequence	2.5	TSA: Zea mays contig20991, mRNA sequence	NA	coding protein	psRNATarget
XM_008654676.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   **||=|*||||||||||||| targets:51   AGCUGCUCCUCCACUUCCCG   70 Target Full Sequence	3.0	PREDICTED: Zea mays proteasome subunit beta type-1 (LOC103632974), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008654674.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   **||=|*||||||||||||| targets:58   AGCUGCUCCUCCACUUCCCG   77 Target Full Sequence	3.0	PREDICTED: Zea mays proteasome subunit beta type-1 (LOC103632974), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654673.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   **||=|*||||||||||||| targets:54   AGCUGCUCCUCCACUUCCCG   73 Target Full Sequence	3.0	PREDICTED: Zea mays proteasome subunit beta type-1 (LOC103632974), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654675.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   **||=|*||||||||||||| targets:206   AGCUGCUCCUCCACUUCCCG   225 Target Full Sequence	3.0	PREDICTED: Zea mays proteasome subunit beta type-1 (LOC103632974), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY105075.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:123   CUCGACGGCUCCACUUCCCG   142 Target Full Sequence	2.5	Zea mays PCO067253 mRNA sequence	NA	coding protein	psRNATarget
EU963280.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:149   CUCGACGGCUCCACUUCCCG   168 Target Full Sequence	2.5	Zea mays clone 260358 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952466.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:148   CUCGACGGCUCCACUUCCCG   167 Target Full Sequence	2.5	Zea mays clone 1281489 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683372.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:157   CUCGACGGCUCCACUUCCCG   176 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU954034.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:150   CUCGACGGCUCCACUUCCCG   169 Target Full Sequence	2.5	Zea mays clone 1452385 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683368.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:159   CUCGACGGCUCCACUUCCCG   178 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008683370.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:160   CUCGACGGCUCCACUUCCCG   179 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008683369.2	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:158   CUCGACGGCUCCACUUCCCG   177 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU947757.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   **||||*||||||||||||* targets:20   ACCUACCCCUCCACUUCCCU   39 Target Full Sequence	3.0	Zea mays clone 356680 mRNA sequence	NA	coding protein	psRNATarget
BT034004.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||*||||*|||||||||| targets:288   AUCUUCGCCACCACUUCCCG   307 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT038701.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||*||||*|||||||||| targets:305   AUCUUCGCCACCACUUCCCG   324 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0309M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156499.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||*||||*|||||||||| targets:382   AUCUUCGCCACCACUUCCCG   401 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283598 (umc1474), mRNA	NA	coding protein	psRNATarget
EU965253.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *|||*||||*|||||||||| targets:382   AUCUUCGCCACCACUUCCCG   401 Target Full Sequence	2.5	Zea mays clone 284838 palmitoyltransferase ZDHHC9 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149242.1	ncRNA:20   AAGAUGCGGAGGUGAAGGGC   1   *||*|||*|||||||||||| targets:112   CUCGACGGCUCCACUUCCCG   131 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100275042), mRNA	NA	coding protein	psRNATarget