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BaseInfo

ncRNA ID	novel_zma_miR2691
Species	Zea mays
Class	miRNA
Genome position	Chr6:126551674-126551758 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089706
Length	24
Mature sequence(if miRNA)	62 - AUUGAGUGAGAUUGAGUCGGUUUA - 85
Stem-loop(if miRNA)	--     -   AG      U   -U    -----  CA    A   U   AUUGA GUG  AUUGAG CGG  UUAA     AU  UAGC AGU A   ||||| |||  |||||| |||  ||||     ||  |||| |||   UAACU CAC  UAACUU GCC  AAUU     UA  AUUG UUA A CC     U   -A      -   UU    AUGCU  AA    C   A
Stem-loop sequence	AUUGAGUGAGAUUGAGUCGGUUUAAAUCAUAGCAAGUUAAAAUUCGUUAAAAUUCGUAUUAAUUCCGUUCAAUACACUUCAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008675817.2	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||=||||||||||*|||||||| targets:4051   UAAAUCGACUCAAUCCCACUCAAU   4074 Target Full Sequence	1.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   |||||=*||||||||||||||||| targets:1437   UAAACUCACUCAAUCUCACUCAAU   1460 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   |||||=*||||||||||||||||| targets:1437   UAAACUCACUCAAUCUCACUCAAU   1460 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2342   UAAACCCAUCCAAUCUCACUCAAU   2365 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2282   UAAACCCAUCCAAUCUCACUCAAU   2305 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2275   UAAACCCAUCCAAUCUCACUCAAU   2298 Target Full Sequence	3.0	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2147   UAAACCCAUCCAAUCUCACUCAAU   2170 Target Full Sequence	3.0	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2146   UAAACCCAUCCAAUCUCACUCAAU   2169 Target Full Sequence	3.0	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:2074   UAAACCCAUCCAAUCUCACUCAAU   2097 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660479.2	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||=|||||*|||*||||||||| targets:1640   UAAAUCGACUAAAUAUCACUCAAU   1663 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103637724 (LOC103637724), mRNA	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   ||||||*|=*|||||||||||||| targets:449   UAAACCCAUCCAAUCUCACUCAAU   472 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   *|||||*|=*|||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAAU   96 Target Full Sequence	3.0	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   *|||||*|=*|||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAAU   96 Target Full Sequence	3.0	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   AUUUGGCUGAGUUAGAGUGAGUUA   1   *|||||*|=*|||||||||||||| targets:73   CAAACCCAUCCAAUCUCACUCAAU   96 Target Full Sequence	3.0	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget