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BaseInfo

ncRNA ID	novel_zma_miR2689
Species	Zea mays
Class	miRNA
Genome position	Chr6:134043448-134043520 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	50 - CCAUAUGUGUUGAGGUGGAUUGGG - 73
Stem-loop(if miRNA)	--              G               C      CCAUAUGUGUUGAG UGGAUUGGGGUGUAA UUAA   |||||||||||||| ||||||||||||||| |||A   GGUGUACACAACUC ACCUGACCCCACAUU AAUC UA              G               U
Stem-loop sequence	CCAUAUGUGUUGAGGUGGAUUGGGGUGUAACUUAAACUAAUUUACACCCCAGUCCAGCUCAACACAUGUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235393.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||||||||||||||||||||||| targets:66   CCCAAUCCACCUCAACACAUAUGG   89 Target Full Sequence	0.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=||||||||||||||||||=||| targets:66   CUCAAUCCACCUCAACACAUGUGG   89 Target Full Sequence	1.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=||||||||||||||||||=||| targets:66   CUCAAUCCACCUCAACACAUGUGG   89 Target Full Sequence	1.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=||||||||||||||||||=||| targets:66   CUCAAUCCACCUCAACACAUGUGG   89 Target Full Sequence	1.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=||||||||||||||||||=||| targets:156   CUCAAUCCACCUCAACACAUGUGG   179 Target Full Sequence	1.5	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=|||||=|||||||| targets:66   CUCAAUCCAUCUCAAUACAUAUGG   89 Target Full Sequence	2.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=|||||=|||||||| targets:66   CUCAAUCCAUCUCAAUACAUAUGG   89 Target Full Sequence	2.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=|||||=|||||||| targets:66   CUCAAUCCAUCUCAAUACAUAUGG   89 Target Full Sequence	2.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=||||||||||=||| targets:815   CUCAAUCCAUCUCAACACAUGUGG   838 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=||||||||||=||| targets:815   CUCAAUCCAUCUCAACACAUGUGG   838 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |=|||||||=||||||||||=||| targets:1058   CUCAAUCCAUCUCAACACAUGUGG   1081 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |*|||||||||||||||||||||| targets:2499   CACAAUCCACCUCAACACAUAUGG   2522 Target Full Sequence	0.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *==|||||||||||||||||=||| targets:64   AUUAAUCCACCUCAACACAUGUGG   87 Target Full Sequence	1.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *=||||||||=|||||||||=||| targets:65   AUCAAUCCACUUCAACACAUGUGG   88 Target Full Sequence	2.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *==|||||||||||||||||=||| targets:64   AUUAAUCCACCUCAACACAUGUGG   87 Target Full Sequence	1.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *==|||||||||||||||||=||| targets:64   AUUAAUCCACCUCAACACAUGUGG   87 Target Full Sequence	1.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *=||||||||=|||||||||=||| targets:65   AUCAAUCCACUUCAACACAUGUGG   88 Target Full Sequence	2.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *=||||||||=|||||||||=||| targets:65   AUCAAUCCACUUCAACACAUGUGG   88 Target Full Sequence	2.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||*|||||=||||||||||=||| targets:101   CCCUAUCCAUCUCAACACAUGUGG   124 Target Full Sequence	2.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||*|||||=||||||||||=||| targets:101   CCCUAUCCAUCUCAACACAUGUGG   124 Target Full Sequence	2.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   |||*|||||=||||||||||=||| targets:101   CCCUAUCCAUCUCAACACAUGUGG   124 Target Full Sequence	2.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   =*=|||=|||||||||||||=||| targets:66   UAUAAUUCACCUCAACACAUGUGG   89 Target Full Sequence	2.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   =*=|||=|||||||||||||=||| targets:66   UAUAAUUCACCUCAACACAUGUGG   89 Target Full Sequence	2.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   =*=|||=|||||||||||||=||| targets:66   UAUAAUUCACCUCAACACAUGUGG   89 Target Full Sequence	2.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *||*||||||=|||||||||=||| targets:78   ACCUAUCCACUUCAACACAUGUGG   101 Target Full Sequence	2.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *||*||||||=|||||||||=||| targets:78   ACCUAUCCACUUCAACACAUGUGG   101 Target Full Sequence	2.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *||*||||||=|||||||||=||| targets:78   ACCUAUCCACUUCAACACAUGUGG   101 Target Full Sequence	2.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
BT053958.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1451   ACUAAUCCAACUCAACACAUGUGG   1474 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1525   ACUAAUCCAACUCAACACAUGUGG   1548 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1657   ACUAAUCCAACUCAACACAUGUGG   1680 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1657   ACUAAUCCAACUCAACACAUGUGG   1680 Target Full Sequence	2.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1678   ACUAAUCCAACUCAACACAUGUGG   1701 Target Full Sequence	2.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1699   ACUAAUCCAACUCAACACAUGUGG   1722 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   GGGUUAGGUGGAGUUGUGUAUACC   1   *|=||||||*||||||||||=||| targets:1712   ACUAAUCCAACUCAACACAUGUGG   1735 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget