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BaseInfo

ncRNA ID	novel_zma_miR2684
Species	Zea mays
Class	miRNA
Genome position	Chr6:163654055-163654187 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	110 - AGGAGCUGUUUGGUUCGUGGCUAA - 133
Stem-loop(if miRNA)	--   A       -    -C        -A        -AC UUGCUUAAUGUUAGUCAUUCGAAUAU   AGG GCUGUUU GGUU  GUGGCUAA  UGUGACAC   U                          A   ||| ||||||| ||||  ||||||||  ||||||||   |                          A   UCC CGACAAA CCAA  UACUGAUU  ACACUGUG   C                          A AA   C       A    CC        AA        AAA AGAUUGAAAAGACAAAUUCCAAUCAA
Stem-loop sequence	AGGAGCUGUUUGGUUCGUGGCUAAAUGUGACACACUUUGCUUAAUGUUAGUCAUUCGAAUAUAAAAACUAACCUUAAACAGAAAAGUUAGACAAAGUGUCACAAAUUAGUCAUCCAACCAAAACAGCCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ110937.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||| targets:140   UUAGCCACGAACCAAACAGCCCCU   163 Target Full Sequence	1.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||| targets:798   UUAGCCACGAACCAAACAGCCCCU   821 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||| targets:2763   UUAGCCACGAACCAAACAGCCCCU   2786 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||||||||||||||*||* targets:85   UUAGCCACGAACCAAACAGCCCCA   108 Target Full Sequence	2.5	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||||||*|||||||||||*||| targets:1572   UUAGCCACCAACCAAACAGCCCCU   1595 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   AAUCGGUGCUUGGUUUGUCGAGGA   1   ||||*=||||||||||||||*||| targets:487   UUAGAUACGAACCAAACAGCCCCU   510 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_008662699.2	ncRNA:24   AAUC-GGUGCUUGGUUUGUCGAGGA   1   ||||-|||||*||||||||||*||| targets:2588   UUAGUCCACGCACCAAACAGCCCCU   2612 Target Full Sequence	2.5	PREDICTED: Zea mays scarecrow-like protein 34 (LOC103640045), mRNA	NA	coding protein	psRNATarget