Search result

BaseInfo

ncRNA ID	novel_zma_miR2669
Species	Zea mays
Class	miRNA
Genome position	Chr5:4987698-4987837 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287160;SRR2287161;SRR2287164;SRR1997865;SRR1997866;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGCGACUAAGGUUAGGCAGAUUGU - 24
Stem-loop(if miRNA)	--     AU         A     CG    U      --CAG   --- UUUGGUUUGUUAUCUAAAGCGGC   AAUCU  CUAAUUUUA UUGCU  AAUU AAGAAC     GUU   G                       A   |||||  ||||||||| |||||  |||| ||||||     |||   |                       C   UUAGA  GAUUGGAAU AGCGA  UUAA UUUUUG     GAA   G                       A UG     CG         C     AA    C      AUUAA   UUC AAUCAGCCCUUUCAAUCCAUGCA
Stem-loop sequence	AAUCUAUCUAAUUUUAAUUGCUCGAAUUUAAGAACCAGGUUGUUUGGUUUGUUAUCUAAAGCGGCACAACGUACCUAACUUUCCCGACUAAGCUUAAGAAUUAGUUUUUCAAUUAAAGCGACUAAGGUUAGGCAGAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008673397.2	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||||||||*||||||||||||| targets:35   ACAAUCUGCCCAACCUUAGUCGCU   58 Target Full Sequence	1.0	PREDICTED: Zea mays adenylate isopentenyltransferase 5, chloroplastic (LOC103649047), mRNA	NA	coding protein	psRNATarget
EU961872.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||||||*||||||||||||||| targets:1377   ACAAUCUGACUAACCUUAGUCGCU   1400 Target Full Sequence	1.0	Zea mays clone 238809 mRNA sequence	NA	coding protein	psRNATarget
JB163484.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1148 from Patent EP2559767	NA	coding protein	psRNATarget
HI403145.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1270 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235275.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1270 from Patent EP2985353	NA	coding protein	psRNATarget
JB163606.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1270 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235153.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1148 from Patent EP2985353	NA	coding protein	psRNATarget
HI403023.1	ncRNA:24   UGUUAGACGGAUUGGAAUCAGCGA   1   ||||*=|||||||*|||||||||| targets:28   ACAACUUGCCUAAGCUUAGUCGCU   51 Target Full Sequence	2.5	Sequence 1148 from Patent EP2074227	NA	coding protein	psRNATarget