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BaseInfo

ncRNA ID	novel_zma_miR2665
Species	Zea mays
Class	miRNA
Genome position	Chr5:36216911-36216994 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287160
Length	24
Mature sequence(if miRNA)	61 - GUGGAUUGAGUGGGAUUAGAUGGG - 84
Stem-loop(if miRNA)	--        AG       A  -------------   GUUUGAAUCC   GUGGAUUG  UGGGAUU GA             UGG          C   ||||||||  ||||||| ||             |||          A   UACCUAAC  ACCCUAA CU             UUC          A UG        CU       C  UUUUUAACUUUUC   AAACUGAACA
Stem-loop sequence	GUGGAUUGAGUGGGAUUAGAUGGGUUUGAAUCCCAAACAAGUCAAACUUCUUUUCAAUUUUUUCCAAUCCCAUCCAAUCCAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008674377.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||||||||=|||||||||||| targets:3392   CUCAUCUAAUCUCACUCAAUCCAC   3415 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||||||||=|||||||||||| targets:3405   CUCAUCUAAUCUCACUCAAUCCAC   3428 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||||||||=|||||||||||| targets:3436   CUCAUCUAAUCUCACUCAAUCCAC   3459 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.0	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.0	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:77   CCCAUCCAAUCCCACUCAAUCCAC   100 Target Full Sequence	1.0	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.0	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.0	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:87   CCCAUCCAAUCCCACUCAAUCCAC   110 Target Full Sequence	1.0	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:96   CCCAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:743   CCCAUCCAAUCCCACUCAAUCCAC   766 Target Full Sequence	1.0	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:872   CCCAUCCAAUCCCACUCAAUCCAC   895 Target Full Sequence	1.0	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:174   CCCAUCCAAUCCCACUCAAUCCAC   197 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:526   CCCAUCCAAUCCCACUCAAUCCAC   549 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1528   CCCAUCCAAUCCCACUCAAUCCAC   1551 Target Full Sequence	1.0	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
XM_020552750.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |||||||||||||*|||||||||| targets:140   CCCAUCUAAUCCCUCUCAAUCCAC   163 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836 Target Full Sequence	1.0	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1813   CCCAUCCAAUCCCACUCAAUCCAC   1836 Target Full Sequence	1.0	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:2498   CCCAUCCAAUCCCACUCAAUCCAC   2521 Target Full Sequence	1.0	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1956   CCCAUCCAAUCCCACUCAAUCCAC   1979 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1079   CCCAUCCAAUCCCACUCAAUCCAC   1102 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1197   CCCAUCCAAUCCCACUCAAUCCAC   1220 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:1227   CCCAUCCAAUCCCACUCAAUCCAC   1250 Target Full Sequence	1.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||| targets:5802   CCCAUCCAAUCCCACUCAAUCCAC   5825 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100 Target Full Sequence	2.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100 Target Full Sequence	2.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:77   CCCAUCCAAUCUCACUCAAUCCAC   100 Target Full Sequence	2.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||||||||||| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.0	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||||||||||| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.0	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||||||||||| targets:78   CUCAUCCAAUCCCACUCAAUCCAC   101 Target Full Sequence	1.0	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
JB163466.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||= targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119 Target Full Sequence	2.0	Sequence 1130 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235135.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||= targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119 Target Full Sequence	2.0	Sequence 1130 from Patent EP2985353	NA	coding protein	psRNATarget
HI403005.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||= targets:96   CCCAUCCAAUCCCACUCAAUCCAU   119 Target Full Sequence	2.0	Sequence 1130 from Patent EP2074227	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||||||||||| targets:118   CUCAUCCAAUCCCACUCAAUCCAC   141 Target Full Sequence	1.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:233   CCCAUCCAAUCCUACUCAAUCCAC   256 Target Full Sequence	2.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:453   CCCAUCCAAUCUCACUCAAUCCAC   476 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:1126   CCCAUCCAAUCCCGCUCAAUCCAC   1149 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:1126   CCCAUCCAAUCCCGCUCAAUCCAC   1149 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
EU949831.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:1011   CCCAUCCAAUCCUACUCAAUCCAC   1034 Target Full Sequence	2.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
NM_001148918.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||= targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487 Target Full Sequence	2.0	Zea mays nodulation homolog 1 (znod1), mRNA	NA	coding protein	psRNATarget
BT043378.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||||||||||= targets:1464   CCCAUCCAAUCCCACUCAAUCCAU   1487 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |*|||||||||||||||||||||= targets:1363   CACAUCUAAUCCCACUCAAUCCAU   1386 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||||||||||||*|||||||| targets:1525   CUCAUCUAAUCCCACCCAAUCCAC   1548 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:1617   CCCAUCCAAUCCCGCUCAAUCCAC   1640 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:2045   CCCAUCCAAUCCCGCUCAAUCCAC   2068 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:2027   CCCAUCCAAUCCCGCUCAAUCCAC   2050 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:2138   CCCAUCCAAUCCCGCUCAAUCCAC   2161 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2078   CCCAUCCAAUCUCACUCAAUCCAC   2101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |*|||||||||||||||||||||= targets:2080   CACAUCUAAUCCCACUCAAUCCAU   2103 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||||||||||| targets:2209   CUCAUCCAAUCCCACUCAAUCCAC   2232 Target Full Sequence	1.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2150   CCCAUCCAAUCUCACUCAAUCCAC   2173 Target Full Sequence	2.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2151   CCCAUCCAAUCUCACUCAAUCCAC   2174 Target Full Sequence	2.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2279   CCCAUCCAAUCUCACUCAAUCCAC   2302 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2286   CCCAUCCAAUCUCACUCAAUCCAC   2309 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||=|||||||||||| targets:2346   CCCAUCCAAUCUCACUCAAUCCAC   2369 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:2798   CCCAUCCAAUCCCGCUCAAUCCAC   2821 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||=|||||||||| targets:2902   CCCAUCCAAUCCCGCUCAAUCCAC   2925 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:3478   CCCAUCCAAUCCUACUCAAUCCAC   3501 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:3464   CCCAUCCAAUCCUACUCAAUCCAC   3487 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:3746   CCCAUCCAAUCCUACUCAAUCCAC   3769 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*|||||=||||||||||| targets:3751   CCCAUCCAAUCCUACUCAAUCCAC   3774 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||=|||||||||||| targets:14   CUCAUCCAAUCUCACUCAAUCCAC   37 Target Full Sequence	2.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||=|||||||||||| targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||=|||||||||||| targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||=|||||||||||| targets:85   CUCAUCCAAUCUCACUCAAUCCAC   108 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.0	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.0	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:96   CUCAUUCAAUCCCACUCAAUCCAC   119 Target Full Sequence	2.0	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	2.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	2.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:96   CUCAUCCAAUCCCACUUAAUCCAC   119 Target Full Sequence	2.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:89   CUCAUUCAAUCCCACUCAAUCCAC   112 Target Full Sequence	2.0	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||=|||||||||||| targets:244   CUCAUCCAAUCUCACUCAAUCCAC   267 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:1122   CUCAUUCAAUCCCACUCAAUCCAC   1145 Target Full Sequence	2.0	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||=|||*|||||||||||||=||| targets:946   CCUAUCAAAUCCCACUCAAUUCAC   969 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=|||=*||||||||||||||||| targets:1413   CUCAUUCAAUCCCACUCAAUCCAC   1436 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||=|||*||||||=|||||||||| targets:58   CCUAUCCAAUCCCGCUCAAUCCAC   81 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:7143   CUCAUCCAAUCCCACUUAAUCCAC   7166 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:7247   CUCAUCCAAUCCCACUUAAUCCAC   7270 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*|||||||||=||||||| targets:7258   CUCAUCCAAUCCCACUUAAUCCAC   7281 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||*|||||||| targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95 Target Full Sequence	2.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||*|||||||| targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95 Target Full Sequence	2.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||*|||||||| targets:72   CCCAUCCAAUCCCACCCAAUCCAC   95 Target Full Sequence	2.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||*|||*||||||||||||||||| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||*|||*||||||||||||||||| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||*|||*||||||||||||||||| targets:96   CCAAUCCAAUCCCACUCAAUCCAC   119 Target Full Sequence	1.0	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||*|||||||| targets:1809   CCCAUCCAAUCCCACCCAAUCCAC   1832 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||||*||||||||*|||||||| targets:1825   CCCAUCCAAUCCCACCCAAUCCAC   1848 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968756.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   **=||=||||||=||||||||||| targets:924   GAUAUUUAAUCCUACUCAAUCCAC   947 Target Full Sequence	2.5	Zea mays clone 323940 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279564.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   **=||=||||||=||||||||||| targets:1245   GAUAUUUAAUCCUACUCAAUCCAC   1268 Target Full Sequence	2.5	Zea mays uncharacterized LOC100277470 (LOC100277470), mRNA	NA	coding protein	psRNATarget
EU960921.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   **=||=||||||=||||||||||| targets:1248   GAUAUUUAAUCCUACUCAAUCCAC   1271 Target Full Sequence	2.5	Zea mays clone 229589 histone deacetylase 11 mRNA, complete cds	NA	coding protein	psRNATarget
EZ082720.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ***=|=|||||||||||||||||| targets:66   AGGGUUUAAUCCCACUCAAUCCAC   89 Target Full Sequence	1.0	TSA: Zea mays contig18363, mRNA sequence	NA	coding protein	psRNATarget
EZ064093.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||||*|*||||||||||||||||= targets:186   CCCACCCAAUCCCACUCAAUCCAU   209 Target Full Sequence	2.0	TSA: Zea mays contig65216, mRNA sequence	NA	coding protein	psRNATarget
BT066485.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ***=|=|||||||||||||||||| targets:70   AGGGUUUAAUCCCACUCAAUCCAC   93 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659614.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||||*||||||||*|||||||| targets:183   CUCAUCCAAUCCCACACAAUCCAC   206 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase A (LOC103637414), mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||*|||*||||||=|||||||||| targets:1884   CCAAUCCAAUCCCGCUCAAUCCAC   1907 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   ||*|||*||||||=|||||||||| targets:1950   CCAAUCCAAUCCCGCUCAAUCCAC   1973 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169468.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||*|*||||||||||||||||= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.0	Sequence 7132 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241137.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||*|*||||||||||||||||= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.0	Sequence 7132 from Patent EP2985353	NA	coding protein	psRNATarget
HI409007.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |=||*|*||||||||||||||||= targets:71   CUCACCCAAUCCCACUCAAUCCAU   94 Target Full Sequence	2.0	Sequence 7132 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |*=|||*||||=|||||||||||| targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |*=|||*||||=|||||||||||| targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |*=|||*||||=|||||||||||| targets:89   CAUAUCCAAUCUCACUCAAUCCAC   112 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   GGGUAG-AUUAGGGUGAGUUAGGUG   1   =*||||-|||*|||||||||||||| targets:801   UACAUCCUAAACCCACUCAAUCCAC   825 Target Full Sequence	3.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   GGGUAG-AUUAGGGUGAGUUAGGUG   1   =*||||-|||*|||||||||||||| targets:801   UACAUCCUAAACCCACUCAAUCCAC   825 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   GGGUAG-AUUAGGGUGAGUUAGGUG   1   =*||||-|||*|||||||||||||| targets:853   UACAUCCUAAACCCACUCAAUCCAC   877 Target Full Sequence	3.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   GGGUAG-AUUAGGGUGAGUUAGGUG   1   =*||||-|||*|||||||||||||| targets:882   UACAUCCUAAACCCACUCAAUCCAC   906 Target Full Sequence	3.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |||*||*||||||*|||||||||| targets:3274   CCCCUCCAAUCCCCCUCAAUCCAC   3297 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |||*||*||||||*|||||||||| targets:1595   CCCCUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |||*||*||||||*|||||||||| targets:1595   CCCCUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GGGUAGA-UUAGGGUGAGUUAGGUG   1   *=|=*||-||||||||||||||||| targets:4054   AUCGACUCAAUCCCACUCAAUCCAC   4078 Target Full Sequence	2.0	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:24   GGGU-AGAUUAGGGUGAGUUAGGUG   1   =|||-||*||||||*|||||||||| targets:3041   UCCACUCCAAUCCCUCUCAAUCCAC   3065 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:24   GGGU-AGAUUAGGGUGAGUUAGGUG   1   =|||-||*||||||*|||||||||| targets:3046   UCCACUCCAAUCCCUCUCAAUCCAC   3070 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GGGUAGAUUAGGGUGAGUUAGGUG   1   |||--||||||||*|||||||||= targets:461   CCC--CUAAUCCCUCUCAAUCCAU   482 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget