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BaseInfo

ncRNA ID novel_zma_miR2664
Species Zea mays
Class miRNA
Genome position Chr5:50452488-50452567 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2089715
Length 24
Mature sequence(if miRNA) 57 - AUCUAUAUGGAUUGAAGGGGAUUG - 80
Stem-loop(if miRNA) --A             A      UU  --G   G  -   A
   UCUAUAUGGAUUG AGGGGA  GA   UGG UU UCA U
   ||||||||||||| ||||||  ||   ||| || ||| C
   AGGUAUACCUAAC UCCCCU  CU   ACU AA GGU C
GUA             C      CU  AAA   G  U   C
Stem-loop sequence AUCUAUAUGGAUUGAAGGGGAUUGAGUGGGUUUCAAUCCCUGGUAAGUCAAAAUCUCUCCCCUCCAAUCCAUAUGGAAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT055069.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:977   CAAUCCCCUUCAAUCCAUAUGGAU   1000

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
BT041454.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521

1.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1498   CAAUCCCCUUCAAUCCAUAUGGAU   1521

1.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
AY105910.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1484   CAAUCCCCUUCAAUCCAUAUGGAU   1507

1.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
BT040193.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1466   CAAUCCCCUUCAAUCCAUAUGGAU   1489

1.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||||||||||||||=|||
targets:1422   CAAUCCCCUUCAAUCCAUAUGGAU   1445

1.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||=||||||||||||||=|||
targets:3121   CAAUCUCCUUCAAUCCAUAUGGAU   3144

2.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |=||||||||||||||||||=|||
targets:1699   CGAUCCCCUUCAAUCCAUAUGGAU   1722

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:302   CAAUCCCCUCCAAUCCAUAUGGAU   325

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_008680349.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:1970   CAAUCCCCCUCAAUCCAUAUGGAU   1993

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:1631   CAAUCCCCUCCAAUCCAUAUGGAU   1654

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004

2.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:1981   CAAUCCCCUCCAAUCCAUAUGGAU   2004

2.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
EU955707.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:607   CAAUCCCCCUCAAUCCAUAUGGAU   630

2.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020545207.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:23   CAAUCCCCUCCAAUCCAUAUGGAU   46

2.5 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:918   CAAUCCCCUCCAAUCCAUAUGGAU   941

2.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
BT061531.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:850   CAAUCCCCCUCAAUCCAUAUGGAU   873

2.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
EU959345.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:846   CAAUCCCCUCCAAUCCAUAUGGAU   869

2.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868

2.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:845   CAAUCCCCUCCAAUCCAUAUGGAU   868

2.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959055.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:847   CAAUCCCCUCCAAUCCAUAUGGAU   870

2.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
BT062922.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:899   CAAUCCCCUCCAAUCCAUAUGGAU   922

2.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:700   CAAUCCCCUCCAAUCCAUAUGGAU   723

2.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||||*||||||||||=|||
targets:446   CAAUCCCCUCCAAUCCAUAUGGAU   469

2.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
HI409817.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:81   CAAUCCCCCUCAAUCCAUAUGGAU   104

2.5 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
LQ241947.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:81   CAAUCCCCCUCAAUCCAUAUGGAU   104

2.5 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
JB170278.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  ||||||||*|||||||||||=|||
targets:81   CAAUCCCCCUCAAUCCAUAUGGAU   104

2.5 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
XM_008672266.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  =||||=|*||||||||||||||||
targets:1200   UAAUCUCAUUCAAUCCAUAUAGAU   1223

2.0 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672265.2
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  =||||=|*||||||||||||||||
targets:948   UAAUCUCAUUCAAUCCAUAUAGAU   971

2.0 PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  =||||||||*||||||||||=|||
targets:1199   UAAUCCCCUCCAAUCCAUAUGGAU   1222

2.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  =||||||||*||||||||||=|||
targets:1161   UAAUCCCCUCCAAUCCAUAUGGAU   1184

2.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT068463.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:1210   GAAUCCCCCUCAAUCCAUAUGGAU   1233

2.5 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
EU972032.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:938   GAAUCCCCCUCAAUCCAUAUGGAU   961

2.5 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:938   GAAUCCCCCUCAAUCCAUAUGGAU   961

2.5 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
BT068594.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:908   GAAUCCCCCUCAAUCCAUAUGGAU   931

2.5 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
AY104043.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:911   GAAUCCCCCUCAAUCCAUAUGGAU   934

2.5 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
EU951312.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *|||||||*|||||||||||=|||
targets:371   GAAUCCCCCUCAAUCCAUAUGGAU   394

2.5 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
NM_001148918.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||**|||||||||||||||
targets:1470   CAAUCCCACUCAAUCCAUAUAGAU   1493

2.0 Zea mays nodulation homolog 1 (znod1), mRNA NA coding protein psRNATarget
BT043378.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||**|||||||||||||||
targets:1470   CAAUCCCACUCAAUCCAUAUAGAU   1493

2.0 Zea mays full-length cDNA clone ZM_BFc0174B12 mRNA, complete cds NA coding protein psRNATarget
EU965203.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||*|||*||||||||||||||
targets:889   CAAUCACCUCCAAUCCAUAUAGAU   912

2.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||*|||*||||||||||||||
targets:889   CAAUCACCUCCAAUCCAUAUAGAU   912

2.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU948993.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |==|=*=*||||||||||||||||
targets:514   CGGUUAUAUUCAAUCCAUAUAGAU   537

3.0 Zea mays clone 393064 mRNA sequence NA coding protein psRNATarget
LQ235135.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||**|||||||||||||||
targets:102   CAAUCCCACUCAAUCCAUAUAGAU   125

2.0 Sequence 1130 from Patent EP2985353 NA coding protein psRNATarget
HI403005.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||**|||||||||||||||
targets:102   CAAUCCCACUCAAUCCAUAUAGAU   125

2.0 Sequence 1130 from Patent EP2074227 NA coding protein psRNATarget
JB163466.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||||**|||||||||||||||
targets:102   CAAUCCCACUCAAUCCAUAUAGAU   125

2.0 Sequence 1130 from Patent EP2559767 NA coding protein psRNATarget
EZ084135.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  |||||=|*|*||||||||||||||
targets:33   CAAUCUCAUCCAAUCCAUAUAGAU   56

3.0 TSA: Zea mays contig19779, mRNA sequence NA coding protein psRNATarget
EZ101759.1
ncRNA:24   GUUAGGGGAAGUUAGGUAUAUCUA   1
  *||*||||*|||||||||||=|||
targets:94   AAAACCCCCUCAAUCCAUAUGGAU   117

2.5 TSA: Zea mays contig37415, mRNA sequence NA coding protein psRNATarget
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