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BaseInfo

ncRNA ID	novel_zma_miR2661
Species	Zea mays
Class	miRNA
Genome position	Chr5:84434744-84434862 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AAUAAAAUAAAAUGUAGGGACUAA - 24
Stem-loop(if miRNA)	--       U         CCU       -   U      C                      AGUCCCU CAUUUUAUU   UUUUAGU CUA AAAUUG UAAAUAUAGAAACUAAAAUA   ||||||| |||||||||   ||||||| ||| |||||| |||||||||||||||||||A   UCAGGGA GUAAAAUAA   AAAAUCA GGU UUUAAU GUUUAUAUCUUUGAUUUUGA AA       U         AAU       A   -      A
Stem-loop sequence	AGUCCCUUCAUUUUAUUCCUUUUUAGUCUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGAUAAUUUUGGAACUAAAAUAAAAUAAAAUGUAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402995.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||||||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	0.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||||||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	0.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||||||||||||||||| targets:29   UUAGUCCCUACAUUUUAUUUUAUU   52 Target Full Sequence	0.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   *||||||||||||||||||||||| targets:2037   CUAGUCCCUACAUUUUAUUUUAUU   2060 Target Full Sequence	0.0	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||||||||||||*|||| targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||||||| targets:812   UUAGUCCCUUCAUUUUAUUUUAUU   835 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||||||| targets:812   UUAGUCCCUUCAUUUUAUUUUAUU   835 Target Full Sequence	1.0	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||||||||||||*|||| targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||||||||||||||||*||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||||||||||||||||*||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||||||||||||||||*||| targets:29   UUAGUCCCUACAUUUUAUUUCAUU   52 Target Full Sequence	1.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||||||=||||||||*|||| targets:1066   UUAGUCCCUAUAUUUUAUUCUAUU   1089 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
NM_001111805.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*=||||||||||||| targets:1506   UUAGUCUCUUUAUUUUAUUUUAUU   1529 Target Full Sequence	3.0	Zea mays uncharacterized LOC542191 (TIDP2941), mRNA	NA	coding protein	psRNATarget
AY104678.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*=||||||||||||| targets:1495   UUAGUCUCUUUAUUUUAUUUUAUU   1518 Target Full Sequence	3.0	Zea mays PCO081661 mRNA sequence	NA	coding protein	psRNATarget
XM_008655999.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1189   UUAGUCUCUUCAUUUUAUUUUAUA   1212 Target Full Sequence	3.0	PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001136807.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1248   UUAGUCUCUUCAUUUUAUUUUAUA   1271 Target Full Sequence	3.0	Zea mays Protein LIKE COV 2 (LOC100191373), mRNA	NA	coding protein	psRNATarget
BT033446.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1248   UUAGUCUCUUCAUUUUAUUUUAUA   1271 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds	NA	coding protein	psRNATarget
BT087555.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1202   UUAGUCUCUUCAUUUUAUUUUAUA   1225 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds	NA	coding protein	psRNATarget
EU962491.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1148   UUAGUCUCUUCAUUUUAUUUUAUA   1171 Target Full Sequence	3.0	Zea mays clone 243115 mRNA sequence	NA	coding protein	psRNATarget
BT039671.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:1088   UUAGUCUCUUCAUUUUAUUUUAUA   1111 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds	NA	coding protein	psRNATarget
BT088053.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:830   UUAGUCUCUUCAUUUUAUUUUAUA   853 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds	NA	coding protein	psRNATarget
JB167198.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4862 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238870.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4865 from Patent EP2985353	NA	coding protein	psRNATarget
HI406740.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4865 from Patent EP2074227	NA	coding protein	psRNATarget
HI406737.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4862 from Patent EP2074227	NA	coding protein	psRNATarget
JB167201.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4865 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238867.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||||||=||*|||||||||||||* targets:29   UUAGUCUCUUCAUUUUAUUUUAUA   52 Target Full Sequence	3.0	Sequence 4862 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008679903.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   ||=|||=||*=||||||||||||| targets:1739   UUGGUCUCUCUAUUUUAUUUUAUU   1762 Target Full Sequence	3.0	PREDICTED: Zea mays berberine bridge enzyme-like 8 (LOC103652911), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||||||||*|||||||||*|||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||-|||||*||||||||||*||| targets:2885   UUA-UCCCUCCAUUUUAUUUCAUU   2907 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||-|||||*||||||||||*||| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:24   AAUCAGGGAUGUAAAAUAAAAUAA   1   |||-|||||*||||||||||*||| targets:886   UUA-UCCCUCCAUUUUAUUUCAUU   908 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget