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BaseInfo

ncRNA ID	novel_zma_miR2660
Species	Zea mays
Class	miRNA
Genome position	Chr5:198004059-198004156 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2638137;SRR2647343;SRR2647385;SRR2647388;SRR2647389;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	75 - AUUGAUCUCAAUCCACAUGUGUUG - 98
Stem-loop(if miRNA)	--       U                           --A        AG   AUUGAUC CAAUCCACAUGUGUUGAGGUGGAUUGG   UGUAACUU  U   ||||||| |||||||||||||||||||||||||||   ||||||||   UAACUGG GUUAGGUGUACAUAACUCCACCUAACC   ACAUUGAA  U CA       U                           CCC        CU
Stem-loop sequence	AUUGAUCUCAAUCCACAUGUGUUGAGGUGGAUUGGAUGUAACUUAGUUUCAAGUUACACCCCCAAUCCACCUCAAUACAUGUGGAUUGUGGUCAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084723.2	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||||||||||| targets:162   CAACACAUGUGGAUUGAGAUCAAU   185 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0166K06 mRNA, complete cds	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:76   CAACACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:78   CAACACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	1.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	1.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	1.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	1.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||||||||||||=||||| targets:113   CAACACAUGUGGAUUGAGGUCAAU   136 Target Full Sequence	1.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||*|||||||| targets:56   CAACACAUGUGGAUUAAGAUCAAU   79 Target Full Sequence	1.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI403051.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1176 from Patent EP2074227	NA	coding protein	psRNATarget
JB163512.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1176 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235181.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:76   CAAUACAUGUGGAUUGAGGUCAAU   99 Target Full Sequence	1.5	Sequence 1176 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	1.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	1.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
JB163536.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:77   CAAUACAUGUGGAUUGAGGUCAAU   100 Target Full Sequence	1.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:78   CAAUACAUGUGGAUUGAGGUCAAU   101 Target Full Sequence	1.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:69   CAAUACAUGUGGAUUGAGGUCAAU   92 Target Full Sequence	1.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	1.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	1.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:92   CAAUACAUGUGGAUUGAGGUCAAU   115 Target Full Sequence	1.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
HI403277.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	1.5	Sequence 1402 from Patent EP2074227	NA	coding protein	psRNATarget
JB163738.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	1.5	Sequence 1402 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235407.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||||||||||=||||| targets:100   CAAUACAUGUGGAUUGAGGUCAAU   123 Target Full Sequence	1.5	Sequence 1402 from Patent EP2985353	NA	coding protein	psRNATarget
HI406945.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	1.5	Sequence 5070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239075.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	1.5	Sequence 5070 from Patent EP2985353	NA	coding protein	psRNATarget
JB167406.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||||||||||||||||||*|||| targets:59   CAACACAUGUGGAUUGAGACCAAU   82 Target Full Sequence	1.5	Sequence 5070 from Patent EP2559767	NA	coding protein	psRNATarget
EZ516950.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||*||||||||||||||||||| targets:58   CAACUCAUGUGGAUUGAGAUCAAU   81 Target Full Sequence	0.0	TSA: Zea mays cultivar W22 CL342Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ111052.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||*||||||||||||||||||| targets:192   CAACUCAUGUGGAUUGAGAUCAAU   215 Target Full Sequence	0.0	TSA: Zea mays contig46713, mRNA sequence	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	1.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	1.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*||||||||||||| targets:76   CAAUACAUGUAGAUUGAGAUCAAU   99 Target Full Sequence	1.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
EU944570.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:723   CAACACAUUUGGAUUGAGGUCAAU   746 Target Full Sequence	2.5	Zea mays clone 222723 mRNA sequence	NA	coding protein	psRNATarget
BT019026.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:944   CAACACAUUUGGAUUGAGGUCAAU   967 Target Full Sequence	2.5	Zea mays clone Contig531.F mRNA sequence	NA	coding protein	psRNATarget
EU960123.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   ||||||||*|||||||||=||||| targets:1570   CAACACAUUUGGAUUGAGGUCAAU   1593 Target Full Sequence	2.5	Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=|||*||||||||||=||||| targets:39   CAAUACAAGUGGAUUGAGGUCAAU   62 Target Full Sequence	2.5	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=|||*||||||||||=||||| targets:39   CAAUACAAGUGGAUUGAGGUCAAU   62 Target Full Sequence	2.5	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=|||*||||||||||=||||| targets:39   CAAUACAAGUGGAUUGAGGUCAAU   62 Target Full Sequence	2.5	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=|||*||||||||||=||||| targets:989   CAAUACAAGUGGAUUGAGGUCAAU   1012 Target Full Sequence	2.5	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
EZ108049.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*|||||||*||||| targets:279   CAAUACAUGUAGAUUGAGCUCAAU   302 Target Full Sequence	2.5	TSA: Zea mays contig43707, mRNA sequence	NA	coding protein	psRNATarget
BT066687.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*|||||||*||||| targets:886   CAAUACAUGUAGAUUGAGCUCAAU   909 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175915.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*|||||||*||||| targets:886   CAAUACAUGUAGAUUGAGCUCAAU   909 Target Full Sequence	2.5	Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA	NA	coding protein	psRNATarget
EU962825.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*|||||||*||||| targets:970   CAAUACAUGUAGAUUGAGCUCAAU   993 Target Full Sequence	2.5	Zea mays clone 245793 mRNA sequence	NA	coding protein	psRNATarget
AY103846.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||||*|||||||*||||| targets:990   CAAUACAUGUAGAUUGAGCUCAAU   1013 Target Full Sequence	2.5	Zea mays PCO130752 mRNA sequence	NA	coding protein	psRNATarget
XM_020546594.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=|||*|||||||||*|||||| targets:1720   CAAUACACGUGGAUUGAAAUCAAU   1743 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100502429 (LOC100502429), mRNA	NA	coding protein	psRNATarget
EU961632.1	ncRNA:24   GUUGUGUACACCUAACUCUAGUUA   1   |||=||||*|||||||||*||||| targets:1820   CAAUACAUAUGGAUUGAGCUCAAU   1843 Target Full Sequence	2.5	Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds	NA	coding protein	psRNATarget