| ncRNA ID | osa-miR1442 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr7:27589072-27589256 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 6 - AUUCAUAGUACUAGAUGUGU - 25 |
| Stem-loop(if miRNA) |
U AG - A G ACUAG -GG U AAG ----A CUAAGUG CU UCUA AUUCAU UACUAG AUGUGUC CAUCCA U GUU UGU UUAUGGGACG GGAGUAG UCUUUUG GAGG A |||| |||||| |||||| ||||||| |||||| | ||| ||| |||||||||| ||||||| ||||||| |||| AGGU UAAGUA AUGAUC UACACAG GUAGGU G UAG AUA AAUACCCUGC CCUCAUC AGGAGAC CUCU A C AA C C G -GUAA GGA U CUA AUAUG --UACUA UA |
| Stem-loop sequence | UCUAUAUUCAUAGUACUAGAUGUGUCACAUCCAGUACUAGGUUGGUGUUUUAUGGGACGAAGGGAGUAGAUCUUUUGCUAAGUGGAGGCUAAAUUCUCAUCAUCAGAGGAGUAUACUACUCCAUCCGUCCCAUAAUAUAAGGGAUAAUGGGUGGAUGCGACACAUCCUAGUAAAAUGAAUCUGGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK107495.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK119339.1 |
|
3.0 | Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015770193.1 |
|
3.0 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA | uncharacterized LOC4329136(LOC4329136) | coding protein | psRNATarget | |||||||||
| CT837823.1 |
|
2.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA245K06, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008). |