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BaseInfo

ncRNA ID	novel_zma_miR2656
Species	Zea mays
Class	miRNA
Genome position	Chr5:158816831-158816983 [-]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	130 - CAUUUUAGGGCUUGUUCGGUUAUU - 153
Stem-loop(if miRNA)	--     U                -   C    A  CA       GA          AAAAAUUGUGAAGA   UUGAGCUGUU   CAUUU AGGGCUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA              AGU          U   ||||| |||||||||||||||| ||| |||| ||  |||||||  ||||||||||              |||   GUGAA UCCCGAACAAGCCAAU GAG GUUA GU  ACCUAAC  GCCCUAACCU              ACC          G CC     U                C   A    G  AC       UC          --------------   CAAACUUAGG
Stem-loop sequence	CAUUUUAGGGCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUGUGAAGAAGUUUGAGCUGUUUGGGAUUCAAACCCAUCCAAUCCCGCUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUUAAGUGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061569.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||=||| targets:1829   UGUAACCGAACAAGCCCUAAGAUG   1852 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055781.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||=||| targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||=||| targets:1640   UGUAACCGAACAAGCCCUAAGAUG   1663 Target Full Sequence	1.5	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||||*| targets:123   UGUAACCGAACAAGCCCUAAAAGG   146 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||||*| targets:123   UGUAACCGAACAAGCCCUAAAAGG   146 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   *=||||||||||||||||||||*| targets:123   UGUAACCGAACAAGCCCUAAAAGG   146 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680078.2	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   |=*|||=|||=||||||||||||| targets:3176   AGCAACUGAAUAAGCCCUAAAAUG   3199 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680080.2	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   |=*|||=|||=||||||||||||| targets:2837   AGCAACUGAAUAAGCCCUAAAAUG   2860 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680079.2	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   |=*|||=|||=||||||||||||| targets:2837   AGCAACUGAAUAAGCCCUAAAAUG   2860 Target Full Sequence	2.0	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1652   GCUAACCGAACAAGCCCUAAACUG   1675 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1448   GCUAACCGAACAAGCCCUAAACUG   1471 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1161   GCUAACCGAACAAGCCCUAAACUG   1184 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1161   GCUAACCGAACAAGCCCUAAACUG   1184 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1157   GCUAACCGAACAAGCCCUAAACUG   1180 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:1157   GCUAACCGAACAAGCCCUAAACUG   1180 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*||||||||||||||||||*||| targets:279   GCUAACCGAACAAGCCCUAAUAUG   302 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*||||||||||||||||||*||| targets:153   GCUAACCGAACAAGCCCUAAUAUG   176 Target Full Sequence	1.5	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UUAUUGGCUUGUUCGGGAUUUUAC   1   =*|||||||||||||||||||*|| targets:124   GCUAACCGAACAAGCCCUAAACUG   147 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget