Search result

BaseInfo

ncRNA ID	novel_zma_miR2654
Species	Zea mays
Class	miRNA
Genome position	Chr5:208265450-208265586 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	23
Mature sequence(if miRNA)	115 - GUCUUGUUCGGUUAUUCCCAAUA - 137
Stem-loop(if miRNA)	--GU            -   C    A  CA       GA          -----AA       U  G   U     CUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUUGGA       AAAUUCU AA AAG U     |||||||||||| ||| |||| ||  |||||||  ||||||||||       ||||||| || ||| U     GAACAAGCCAAU GAG GUUA GU  ACCUAAC  ACCCUAACCU       UUUAAGG UU UUC G UCCC            C   A    G  AC       UC          ACCCAAA       U  G   A
Stem-loop sequence	GUCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUUCUUAAGAAGUUUGACUUGUUUGGAAUUUAAACCCAUCCAAUCCCACUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT070056.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||||||||||||||||||| targets:864   UAUUGGGAAUAACCGAACAAGAC   886 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds	NA	coding protein	psRNATarget
AY103687.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||||||||||||||||||| targets:1175   UAUUGGGAAUAACCGAACAAGAC   1197 Target Full Sequence	0.0	Zea mays PCO106710 mRNA sequence	NA	coding protein	psRNATarget
EZ059008.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||=||||| targets:71   UAUUGGGAAUAACCGAAUAAGAC   93 Target Full Sequence	1.5	TSA: Zea mays contig60130, mRNA sequence	NA	coding protein	psRNATarget
LQ238017.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:111   UAUUGGGAAUAACCGAACAAGGC   133 Target Full Sequence	1.5	Sequence 4012 from Patent EP2985353	NA	coding protein	psRNATarget
JB166348.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:111   UAUUGGGAAUAACCGAACAAGGC   133 Target Full Sequence	1.5	Sequence 4012 from Patent EP2559767	NA	coding protein	psRNATarget
HI405887.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:111   UAUUGGGAAUAACCGAACAAGGC   133 Target Full Sequence	1.5	Sequence 4012 from Patent EP2074227	NA	coding protein	psRNATarget
JB163448.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:124   UAUUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1112 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235117.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:124   UAUUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1112 from Patent EP2985353	NA	coding protein	psRNATarget
HI402987.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:124   UAUUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1112 from Patent EP2074227	NA	coding protein	psRNATarget
AY111036.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:198   UAUUGGGAAUAACCGAACAAGGC   220 Target Full Sequence	1.5	Zea mays CL1582_4 mRNA sequence	NA	coding protein	psRNATarget
BT086570.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:239   UAUUGGGAAUAACCGAACAAGGC   261 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds	NA	coding protein	psRNATarget
AY109413.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:1671   UAUUGGGAAUAACCGAACAAGGC   1693 Target Full Sequence	1.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
EU962683.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:1630   UAUUGGGAAUAACCGAACAAGGC   1652 Target Full Sequence	1.5	Zea mays clone 244714 mRNA sequence	NA	coding protein	psRNATarget
XM_008680050.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||=| targets:1756   UAUUGGGAAUAACCGAACAAGGC   1778 Target Full Sequence	1.5	PREDICTED: Zea mays sphingoid long-chain bases kinase 1 (LOC103653085), mRNA	NA	coding protein	psRNATarget
EZ074510.1	ncRNA:23   AUA--ACCCUUAUUGGCUUGUUCUG   1   |||--|||||||||||||||||||| targets:67   UAUAAUGGGAAUAACCGAACAAGAC   91 Target Full Sequence	0.0	TSA: Zea mays contig10147, mRNA sequence	NA	coding protein	psRNATarget
BT084790.1	ncRNA:23   AUA--ACCCUUAUUGGCUUGUUCUG   1   |||--|||||||||||||||||||| targets:1130   UAUAAUGGGAAUAACCGAACAAGAC   1154 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175804.1	ncRNA:23   AUA--ACCCUUAUUGGCUUGUUCUG   1   |||--|||||||||||||||||||| targets:2969   UAUAAUGGGAAUAACCGAACAAGAC   2993 Target Full Sequence	0.0	Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA	NA	coding protein	psRNATarget
BT066344.1	ncRNA:23   AUA--ACCCUUAUUGGCUUGUUCUG   1   |||--|||||||||||||||||||| targets:2969   UAUAAUGGGAAUAACCGAACAAGAC   2993 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds	NA	coding protein	psRNATarget
LQ237957.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:111   UAUUGGGAAUAACCGAACAAGCC   133 Target Full Sequence	1.5	Sequence 3952 from Patent EP2985353	NA	coding protein	psRNATarget
HI405827.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:111   UAUUGGGAAUAACCGAACAAGCC   133 Target Full Sequence	1.5	Sequence 3952 from Patent EP2074227	NA	coding protein	psRNATarget
JB166288.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:111   UAUUGGGAAUAACCGAACAAGCC   133 Target Full Sequence	1.5	Sequence 3952 from Patent EP2559767	NA	coding protein	psRNATarget
HI405876.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:113   UAUUGGGAAUAACCGAACAAGCC   135 Target Full Sequence	1.5	Sequence 4001 from Patent EP2074227	NA	coding protein	psRNATarget
JB166337.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:113   UAUUGGGAAUAACCGAACAAGCC   135 Target Full Sequence	1.5	Sequence 4001 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238006.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:113   UAUUGGGAAUAACCGAACAAGCC   135 Target Full Sequence	1.5	Sequence 4001 from Patent EP2985353	NA	coding protein	psRNATarget
JB166341.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4005 from Patent EP2559767	NA	coding protein	psRNATarget
JB166293.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3957 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237962.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3957 from Patent EP2985353	NA	coding protein	psRNATarget
JB166309.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3973 from Patent EP2559767	NA	coding protein	psRNATarget
HI405881.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4006 from Patent EP2074227	NA	coding protein	psRNATarget
JB166301.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
JB166342.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4006 from Patent EP2559767	NA	coding protein	psRNATarget
HI405832.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3957 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238010.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4005 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237978.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3973 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238011.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4006 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
HI405880.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 4005 from Patent EP2074227	NA	coding protein	psRNATarget
HI405840.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
HI405848.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:115   UAUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3973 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238016.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:118   UAUUGGGAAUAACCGAACAAGCC   140 Target Full Sequence	1.5	Sequence 4011 from Patent EP2985353	NA	coding protein	psRNATarget
JB166347.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:118   UAUUGGGAAUAACCGAACAAGCC   140 Target Full Sequence	1.5	Sequence 4011 from Patent EP2559767	NA	coding protein	psRNATarget
HI405886.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:118   UAUUGGGAAUAACCGAACAAGCC   140 Target Full Sequence	1.5	Sequence 4011 from Patent EP2074227	NA	coding protein	psRNATarget
EU942632.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:281   UAUUGGGAAUAACCGAACAAGCC   303 Target Full Sequence	1.5	Zea mays clone 1525411 mRNA sequence	NA	coding protein	psRNATarget
EU957313.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:759   UAUUGGGAAUAACCGAACAAGCC   781 Target Full Sequence	1.5	Zea mays clone 1588341 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149687.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:759   UAUUGGGAAUAACCGAACAAGCC   781 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:792   UAUUGGGAAUAACCGAACAAGCC   814 Target Full Sequence	1.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:792   UAUUGGGAAUAACCGAACAAGCC   814 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
BT018247.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:483   UAUUGGGAAUAACCGAACAAGCC   505 Target Full Sequence	1.5	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
EU963259.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1035   UAUUGGGAAUAACCGAACAAGCC   1057 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT068791.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1368   UAUUGGGAAUAACCGAACAAGUC   1390 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1314   UAUUGGGAAUAACCGAACAAGCC   1336 Target Full Sequence	1.5	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
BT062563.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1314   UAUUGGGAAUAACCGAACAAGCC   1336 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
BT066364.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1544   UAUUGGGAAUAACCGAACAAGCC   1566 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1544   UAUUGGGAAUAACCGAACAAGCC   1566 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
XM_008669845.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:1821   UAUUGGGAAUAACCGAACAAGCC   1843 Target Full Sequence	1.5	PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970939.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:2128   UAUUGGGAAUAACCGAACAAGCC   2150 Target Full Sequence	1.5	Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:2577   UAUUGGGAAUAACCGAACAAGCC   2599 Target Full Sequence	1.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*| targets:2557   UAUUGGGAAUAACCGAACAAGCC   2579 Target Full Sequence	1.5	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167769.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*= targets:116   UAUUGGGAAUAACCGAACAAGCU   138 Target Full Sequence	2.5	Sequence 5433 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239438.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*= targets:116   UAUUGGGAAUAACCGAACAAGCU   138 Target Full Sequence	2.5	Sequence 5433 from Patent EP2985353	NA	coding protein	psRNATarget
HI407308.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||||||||||||||||*= targets:116   UAUUGGGAAUAACCGAACAAGCU   138 Target Full Sequence	2.5	Sequence 5433 from Patent EP2074227	NA	coding protein	psRNATarget
JB166290.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||=| targets:116   UAUUAGGAAUAACCGAACAAGGC   138 Target Full Sequence	2.5	Sequence 3954 from Patent EP2559767	NA	coding protein	psRNATarget
HI405829.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||=| targets:116   UAUUAGGAAUAACCGAACAAGGC   138 Target Full Sequence	2.5	Sequence 3954 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237959.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||=| targets:116   UAUUAGGAAUAACCGAACAAGGC   138 Target Full Sequence	2.5	Sequence 3954 from Patent EP2985353	NA	coding protein	psRNATarget
HI403086.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*||||||||||||||||||=| targets:119   UAAUGGGAAUAACCGAACAAGGC   141 Target Full Sequence	1.5	Sequence 1211 from Patent EP2074227	NA	coding protein	psRNATarget
JB163547.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*||||||||||||||||||=| targets:119   UAAUGGGAAUAACCGAACAAGGC   141 Target Full Sequence	1.5	Sequence 1211 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235216.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*||||||||||||||||||=| targets:119   UAAUGGGAAUAACCGAACAAGGC   141 Target Full Sequence	1.5	Sequence 1211 from Patent EP2985353	NA	coding protein	psRNATarget
HI405822.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||*|||||||||||||=| targets:115   UAUUGGGUAUAACCGAACAAGGC   137 Target Full Sequence	2.5	Sequence 3947 from Patent EP2074227	NA	coding protein	psRNATarget
JB166283.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||*|||||||||||||=| targets:115   UAUUGGGUAUAACCGAACAAGGC   137 Target Full Sequence	2.5	Sequence 3947 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237952.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||||*|||||||||||||=| targets:115   UAUUGGGUAUAACCGAACAAGGC   137 Target Full Sequence	2.5	Sequence 3947 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001147267.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||*||||||||||||||=| targets:1564   UAUUGGAAAUAACCGAACAAGGC   1586 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA	NA	coding protein	psRNATarget
BT039499.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||*||||||||||||||=| targets:1564   UAUUGGAAAUAACCGAACAAGGC   1586 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds	NA	coding protein	psRNATarget
BT018572.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||=| targets:1863   UAUUAGGAAUAACCGAACAAGGC   1885 Target Full Sequence	2.5	Zea mays clone EL01N0443D02.d mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*||||||||||||||||||=| targets:2518   UAAUGGGAAUAACCGAACAAGGC   2540 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403092.1	ncRNA:23   AUA----ACCCUUAUUGGCUUGUUCUG   1   |=|----||||||||||||||||||=| targets:120   UGUGCAAUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1217 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235222.1	ncRNA:23   AUA----ACCCUUAUUGGCUUGUUCUG   1   |=|----||||||||||||||||||=| targets:120   UGUGCAAUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1217 from Patent EP2985353	NA	coding protein	psRNATarget
JB163553.1	ncRNA:23   AUA----ACCCUUAUUGGCUUGUUCUG   1   |=|----||||||||||||||||||=| targets:120   UGUGCAAUGGGAAUAACCGAACAAGGC   146 Target Full Sequence	1.5	Sequence 1217 from Patent EP2559767	NA	coding protein	psRNATarget
EZ076130.1	ncRNA:23   AUA--ACCCUUAUUGGCUUGUUCUG   1   |||--||*||||||||||||||||| targets:72   UAUAAUGAGAAUAACCGAACAAGAC   96 Target Full Sequence	1.0	TSA: Zea mays contig11767, mRNA sequence	NA	coding protein	psRNATarget
JB166305.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:114   UUUUGGGAAUAACCGAACAAGCC   136 Target Full Sequence	1.5	Sequence 3969 from Patent EP2559767	NA	coding protein	psRNATarget
JB166298.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||*|||||||||||||||*| targets:114   UAUUGAGAAUAACCGAACAAGCC   136 Target Full Sequence	2.5	Sequence 3962 from Patent EP2559767	NA	coding protein	psRNATarget
HI405837.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||*|||||||||||||||*| targets:114   UAUUGAGAAUAACCGAACAAGCC   136 Target Full Sequence	2.5	Sequence 3962 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237967.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||*|||||||||||||||*| targets:114   UAUUGAGAAUAACCGAACAAGCC   136 Target Full Sequence	2.5	Sequence 3962 from Patent EP2985353	NA	coding protein	psRNATarget
HI405844.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:114   UUUUGGGAAUAACCGAACAAGCC   136 Target Full Sequence	1.5	Sequence 3969 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237974.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:114   UUUUGGGAAUAACCGAACAAGCC   136 Target Full Sequence	1.5	Sequence 3969 from Patent EP2985353	NA	coding protein	psRNATarget
HI405851.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3976 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237953.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:115   UAUUAGGAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3948 from Patent EP2985353	NA	coding protein	psRNATarget
JB166282.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*|*|||||||||||||||||| targets:115   UAAUAGGAAUAACCGAACAAGAC   137 Target Full Sequence	1.0	Sequence 3946 from Patent EP2559767	NA	coding protein	psRNATarget
HI405835.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3960 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237955.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||*||||||||||||||*| targets:115   UAUUGGAAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3950 from Patent EP2985353	NA	coding protein	psRNATarget
HI405821.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*|*|||||||||||||||||| targets:115   UAAUAGGAAUAACCGAACAAGAC   137 Target Full Sequence	1.0	Sequence 3946 from Patent EP2074227	NA	coding protein	psRNATarget
JB166284.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:115   UAUUAGGAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3948 from Patent EP2559767	NA	coding protein	psRNATarget
HI405823.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:115   UAUUAGGAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3948 from Patent EP2074227	NA	coding protein	psRNATarget
HI405825.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||*||||||||||||||*| targets:115   UAUUGGAAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3950 from Patent EP2074227	NA	coding protein	psRNATarget
JB166312.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3976 from Patent EP2559767	NA	coding protein	psRNATarget
JB166296.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3960 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237965.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3960 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237951.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*|*|||||||||||||||||| targets:115   UAAUAGGAAUAACCGAACAAGAC   137 Target Full Sequence	1.0	Sequence 3946 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237981.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:115   UUUUGGGAAUAACCGAACAAGCC   137 Target Full Sequence	1.5	Sequence 3976 from Patent EP2985353	NA	coding protein	psRNATarget
JB166286.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||||*||||||||||||||*| targets:115   UAUUGGAAAUAACCGAACAAGCC   137 Target Full Sequence	2.5	Sequence 3950 from Patent EP2559767	NA	coding protein	psRNATarget
HI403070.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *=*||||||||||||||||||=| targets:112   GGAUGGGAAUAACCGAACAAGGC   134 Target Full Sequence	1.5	Sequence 1195 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235200.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *=*||||||||||||||||||=| targets:112   GGAUGGGAAUAACCGAACAAGGC   134 Target Full Sequence	1.5	Sequence 1195 from Patent EP2985353	NA	coding protein	psRNATarget
JB163531.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *=*||||||||||||||||||=| targets:112   GGAUGGGAAUAACCGAACAAGGC   134 Target Full Sequence	1.5	Sequence 1195 from Patent EP2559767	NA	coding protein	psRNATarget
EU968099.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:248   UUUUGGGAAUAACCGAACAAGCC   270 Target Full Sequence	1.5	Zea mays clone 314232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956028.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||*||||||||||*|||||||| targets:1565   UAUAGGGAAUAACCAAACAAGAC   1587 Target Full Sequence	1.5	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062929.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||*||||||||||*|||||||| targets:1654   UAUAGGGAAUAACCAAACAAGAC   1676 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:1538   UUUUGGGAAUAACCGAACAAGCC   1560 Target Full Sequence	1.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||*||||||||||*|||||||| targets:1755   UAUAGGGAAUAACCAAACAAGAC   1777 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||*||||||||||*|||||||| targets:1755   UAUAGGGAAUAACCAAACAAGAC   1777 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*|*|||||||||||||||||| targets:480   UAAUAGGAAUAACCGAACAAGAC   502 Target Full Sequence	1.0	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:2874   UAUUAGGAAUAACCGAACAAGCC   2896 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:2883   UAUUAGGAAUAACCGAACAAGCC   2905 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550022.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3709   UAUUAGGAAUAACCGAACAAGCC   3731 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008679798.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |||||**|||||||||||||||| targets:166   UAUUGUAAAUAACCGAACAAGAC   188 Target Full Sequence	2.0	PREDICTED: Zea mays receptor-like protein kinase HSL1 (LOC103652818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550024.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3733   UAUUAGGAAUAACCGAACAAGCC   3755 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020550021.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3787   UAUUAGGAAUAACCGAACAAGCC   3809 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020550020.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3781   UAUUAGGAAUAACCGAACAAGCC   3803 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020550017.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3789   UAUUAGGAAUAACCGAACAAGCC   3811 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550019.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3776   UAUUAGGAAUAACCGAACAAGCC   3798 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550016.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:3851   UAUUAGGAAUAACCGAACAAGCC   3873 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550018.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:4175   UAUUAGGAAUAACCGAACAAGCC   4197 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:311   UUUUGGGAAUAACCGAACAAGCC   333 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020550015.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||||*||||||||||||||||*| targets:4271   UAUUAGGAAUAACCGAACAAGCC   4293 Target Full Sequence	2.5	PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:311   UUUUGGGAAUAACCGAACAAGCC   333 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:311   UUUUGGGAAUAACCGAACAAGCC   333 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:311   UUUUGGGAAUAACCGAACAAGCC   333 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   |*|||||||||||||||||||*| targets:2666   UUUUGGGAAUAACCGAACAAGCC   2688 Target Full Sequence	1.5	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ113619.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   ||*|*||||||||||||||||=| targets:14   UAAUAGGAAUAACCGAACAAGGC   36 Target Full Sequence	2.5	TSA: Zea mays contig49280, mRNA sequence	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *=*|||||*||||||||||||*| targets:41   GGAUGGGAUUAACCGAACAAGCC   63 Target Full Sequence	2.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *|||||*||||||||||||||*| targets:1443   GAUUGGAAAUAACCGAACAAGCC   1465 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *|||||*||||||||||||||*| targets:1487   GAUUGGAAAUAACCGAACAAGCC   1509 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *|||||*||||||||||||||*| targets:1505   GAUUGGAAAUAACCGAACAAGCC   1527 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *|||||*||||||||||||||*| targets:1519   GAUUGGAAAUAACCGAACAAGCC   1541 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:23   AUAACCCUUAUUGGCUUGUUCUG   1   *|||||*||||||||||||||*| targets:1519   GAUUGGAAAUAACCGAACAAGCC   1541 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget