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BaseInfo

ncRNA ID	novel_zma_miR2652
Species	Zea mays
Class	miRNA
Genome position	Chr5:23453463-23453544 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	21
Mature sequence(if miRNA)	1 - GGAGGGGAUUGAAGGGGCUAA - 21
Stem-loop(if miRNA)	--           A    G        CA           A   GGAGGGGAUUG AGGG CUAAAAUC  CUUCUUAUUCA A   ||||||||||| |||| ||||||||  |||||||||||   CCUCCCCUAAC UCCC GAUUUUAG  GAGGAAUAAGU A GA           C    G        AG           U
Stem-loop sequence	GGAGGGGAUUGAAGGGGCUAAAAUCCACUUCUUAUUCAAAAUUGAAUAAGGAGGAGAUUUUAGGCCCUCCAAUCCCCUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   ||||||||||||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCC   1132 Target Full Sequence	0.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||*|=||||||||||||| targets:1324   UUAGCACUUUCAAUCCCCUCC   1344 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:85   CUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:85   CUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:85   CUAGCCCCUUCAAUCCUCUCC   105 Target Full Sequence	1.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:1038   CUAGCCCCUUCAAUCCUCUCC   1058 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:871   CUAGCCCCUUCAAUCCUCUCC   891 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *|||||||||||||||=|||| targets:871   CUAGCCCCUUCAAUCCUCUCC   891 Target Full Sequence	1.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
EU974541.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1478   UUAGCCCCUUCAAUCCCCUUG   1498 Target Full Sequence	2.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1577   UUAGCCCCUUCAAUCCCCUUG   1597 Target Full Sequence	2.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1524   UUAGCCCCUUCAAUCCCCUUG   1544 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1617   UUAGCCCCUUCAAUCCCCUUG   1637 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1650   UUAGCCCCUUCAAUCCCCUUG   1670 Target Full Sequence	2.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1670   UUAGCCCCUUCAAUCCCCUUG   1690 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1716   UUAGCCCCUUCAAUCCCCUUG   1736 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||||||||||||=* targets:1838   UUAGCCCCUUCAAUCCCCUUG   1858 Target Full Sequence	2.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||*||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||*||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   ||||||||*|||||||||||| targets:7   UUAGCCCCCUCAAUCCCCUCC   27 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||||||||*||||||||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   *||||=||*|||||||||||| targets:1671   CUAGCUCCCUCAAUCCCCUCC   1691 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   |||*|||||*||||||||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU947467.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   **|*||=|||||||||||||| targets:1297   CAAACCUCUUCAAUCCCCUCC   1317 Target Full Sequence	2.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:21   AAUCGGGGAAGUUAGGGGAGG   1   **|*||=|||||||||||||| targets:2000   CAAACCUCUUCAAUCCCCUCC   2020 Target Full Sequence	2.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget