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BaseInfo

ncRNA ID novel_zma_miR2650
Species Zea mays
Class miRNA
Genome position Chr5:221223575-221223705 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2089714;SRR2287165;SRR2089704;SRR2089705;SRR2089706;SRR2089708
Length 24
Mature sequence(if miRNA) 108 - AGGGCUUGUUUGGUUCGUGGCUAA - 131
Stem-loop(if miRNA) --      U           -GG      G            U    G  -------------         G
  AGGGCU GUUUGGUUCGU   CUAAUU UGCCACACUUUG CUAA UU             UAGUUGUUC A
  |||||| |||||||||||   |||||| |||||||||||| |||| ||             ||||||||| A
  UCCCGA CAAACCAAGCA   GAUUGA ACGGUGUGAAAC GAUU AA             AUCAAUAAG U
UA      -           ACA      -            U    G  AAGACGGAUUACA         U
Stem-loop sequence AGGGCUUGUUUGGUUCGUGGCUAAUUGUGCCACACUUUGUCUAAGUUUAGUUGUUCGAAUUGAAUAACUAACAUUAGGCAGAAAAGUUAGUCAAAGUGUGGCAAGUUAGACAACGAACCAAACAGCCCUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163753.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||||
targets:109   UUAGCCACGAACCAAACAAGCCCU   132

0.0 Sequence 1417 from Patent EP2559767 NA coding protein psRNATarget
HI403292.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||||
targets:109   UUAGCCACGAACCAAACAAGCCCU   132

0.0 Sequence 1417 from Patent EP2074227 NA coding protein psRNATarget
LQ235422.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||||
targets:109   UUAGCCACGAACCAAACAAGCCCU   132

0.0 Sequence 1417 from Patent EP2985353 NA coding protein psRNATarget
HI403368.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||=|
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

1.5 Sequence 1493 from Patent EP2074227 NA coding protein psRNATarget
LQ235498.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||=|
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

1.5 Sequence 1493 from Patent EP2985353 NA coding protein psRNATarget
JB163829.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||=|
targets:107   UUAGCCACGAACCAAACAAGCCUU   130

1.5 Sequence 1493 from Patent EP2559767 NA coding protein psRNATarget
EU958119.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||=|
targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044

1.5 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||||||=|
targets:1021   UUAGCCACGAACCAAACAAGCCUU   1044

1.5 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
XM_008681572.2
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||=|||||
targets:2491   UUAGCCACGAACCAAACAGGCCCU   2514

1.5 PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA NA coding protein psRNATarget
XM_020540795.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||||||||||||=||||*
targets:818   UUAGCCACGAACCAAACAGGCCCA   841

2.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001158867.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:896   UUAGUCACCGAACCAAACAAGCCCU   920

2.0 Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA NA coding protein psRNATarget
NM_001158867.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:856   UUAGUCACCGAACCAAACAAGCCCU   880

2.0 Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA NA coding protein psRNATarget
EU974994.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:896   UUAGUCACCGAACCAAACAAGCCCU   920

2.0 Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds NA coding protein psRNATarget
EU974994.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:856   UUAGUCACCGAACCAAACAAGCCCU   880

2.0 Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds NA coding protein psRNATarget
BT088093.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:877   UUAGUCACCGAACCAAACAAGCCCU   901

2.0 Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds NA coding protein psRNATarget
BT088093.1
ncRNA:24   AAUCGGUG-CUUGGUUUGUUCGGGA   1
  ||||=|||-||||||||||||||||
targets:837   UUAGUCACCGAACCAAACAAGCCCU   861

2.0 Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds NA coding protein psRNATarget
XM_020545710.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||*|||||||||||||||
targets:2662   UUAGCCACAAACCAAACAAGCCCU   2685

1.0 PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA NA coding protein psRNATarget
XM_008676108.2
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||*|||||||||=|||||
targets:995   UUAGCCACAAACCAAACAGGCCCU   1018

2.5 PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
NM_001346844.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||*|||||||||=|||||
targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608

2.5 Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA NA coding protein psRNATarget
XM_008671564.2
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||*||||||||||||||*||||
targets:1281   UUAGACACGAACCAAACAACCCCU   1304

1.5 PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA NA coding protein psRNATarget
XM_020549322.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||*||||||||||||||*||||
targets:1281   UUAGACACGAACCAAACAACCCCU   1304

1.5 PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA NA coding protein psRNATarget
XM_020543351.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  ||||||||*|||||||||*|||||
targets:887   UUAGCCACAAACCAAACAUGCCCU   910

2.5 PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001149469.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  |||*||||*|||||||||=|||||
targets:215   UUAACCACAAACCAAACAGGCCCU   238

2.5 Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA NA coding protein psRNATarget
EU955574.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  |||*||||*|||||||||=|||||
targets:215   UUAACCACAAACCAAACAGGCCCU   238

2.5 Zea mays clone 1537438 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT037664.1
ncRNA:24   AAUCGGU-GCUUGGUUUGUUCGGGA   1
  ||||*||-|*|||||||||||||||
targets:1333   UUAGACAUCAAACCAAACAAGCCCU   1357

3.0 Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds NA coding protein psRNATarget
NM_001154039.2
ncRNA:24   AAUCGGU-GCUUGGUUUGUUCGGGA   1
  ||||*||-|*|||||||||||||||
targets:2080   UUAGACAUCAAACCAAACAAGCCCU   2104

3.0 Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA NA coding protein psRNATarget
EU955653.1
ncRNA:24   AAUCGGU-GCUUGGUUUGUUCGGGA   1
  ||||*||-|*|||||||||||||||
targets:2081   UUAGACAUCAAACCAAACAAGCCCU   2105

3.0 Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds NA coding protein psRNATarget
EZ072721.1
ncRNA:24   AAU--CGGUGCUUGGUUUGUUCGGGA   1
  ||=--|=*||||||||||||*|||||
targets:20   UUGAGGUAACGAACCAAACAUGCCCU   45

2.5 TSA: Zea mays contig08358, mRNA sequence NA coding protein psRNATarget
XM_020546578.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  **||*||=*|||||||||||||||
targets:3248   CAAGGCAUCAACCAAACAAGCCCU   3271

2.0 PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase MINDY-2-like (LOC103641269), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546577.1
ncRNA:24   AAUCGGUGCUUGGUUUGUUCGGGA   1
  **||*||=*|||||||||||||||
targets:3267   CAAGGCAUCAACCAAACAAGCCCU   3290

2.0 PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase MINDY-2-like (LOC103641269), transcript variant X1, mRNA NA coding protein psRNATarget
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