Search result

BaseInfo

ncRNA ID	osa-miR2873c
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:27503433-27503554 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	101 - CAAAUGAAGUUGAGUUUGGAC - 121
Stem-loop(if miRNA)	UUA     A           ---             AAG                      AC    CCAAA CUCAACUUUAU   AUGGGAGUAAAAA   GAUAAAUUUCGGGUGAAUAGUG  A    ||||| |||||||||||   |||||||||||||   ||||||||||||||||||||||    GGUUU GAGUUGAAGUA   UAUCUUUGUUUUU   UUGUUUAAAGUUUACUUAUUAU  G ACA     -           AAC             --A                      GG
Stem-loop sequence	UUACCAAAACUCAACUUUAUAUGGGAGUAAAAAAAGGAUAAAUUUCGGGUGAAUAGUGACAGGGUAUUAUUCAUUUGAAAUUUGUUAUUUUUGUUUCUAUCAAAUGAAGUUGAGUUUGGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236280.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2275 from Patent EP2985353	NA	coding protein	psRNATarget
JB164611.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2275 from Patent EP2559767	NA	coding protein	psRNATarget
HI404150.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2275 from Patent EP2074227	NA	coding protein	psRNATarget
HI404134.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2259 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236264.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2259 from Patent EP2985353	NA	coding protein	psRNATarget
JB164595.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||||||||||||| targets:43   GUCCAAACUCAACUUCAUUUG   63 Target Full Sequence	0.0	Sequence 2259 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||=|||||||||| targets:43   GUCCAAACUCGACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||=|||||||||| targets:43   GUCCAAACUCGACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
HI403798.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||||||||||=|||||||||| targets:43   GUCCAAACUCGACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||||||||=||||||||||| targets:43   GUCCAAACUUAACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
JB164086.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||||||||=||||||||||| targets:43   GUCCAAACUUAACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
HI403625.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||||||||=||||||||||| targets:43   GUCCAAACUUAACUUCAUUUG   63 Target Full Sequence	1.5	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
CT829929.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||=|||||||||||=||||| targets:1208   GUCUAAACUCAACUUUAUUUG   1228 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119P11, full insert sequence	NA	coding protein	psRNATarget
XM_015793144.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||=|||||||||||=||||| targets:1195   GUCUAAACUCAACUUUAUUUG   1215 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (LOC4345581), mRNA	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic(LOC4345581)	coding protein	psRNATarget
AK287885.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||=|||||||||||=||||| targets:1152   GUCUAAACUCAACUUUAUUUG   1172 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065207M01, full insert sequence	NA	coding protein	psRNATarget
CT835929.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   ||=*||||||||||||||||| targets:581   GUUAAAACUCAACUUCAUUUG   601 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005B17, full insert sequence	NA	coding protein	psRNATarget
AK062968.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |*||||||||||||||=|||| targets:506   GACCAAACUCAACUUCGUUUG   526 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-109-E01, full insert sequence	NA	coding protein	psRNATarget
CT832946.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||||||*||||||||||||* targets:825   GUCCAAAAUCAACUUCAUUUU   845 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:21   CAGGUUUGAGUUGAAGUAAAC   1   |||||||*||||||||||||* targets:881   GUCCAAAAUCAACUUCAUUUU   901 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).