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BaseInfo

ncRNA ID	novel_zma_miR2649
Species	Zea mays
Class	miRNA
Genome position	Chr5:21127881-21127976 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2287162;SRR1997865;SRR2089699;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	23
Mature sequence(if miRNA)	1 - GACAAGAGGAUCACGGGAGGAUU - 23
Stem-loop(if miRNA)	--   A    G           A   A    C  UC    ---A      A   GAC AGAG AUCACGGGAGG UUG AGGG AU  UGAG    GAAAUA A   ||| |||| ||||||||||| ||| |||| ||  ||||    ||||||   CUG UCUC UAGUGCCCUCC AAC UCCC UA  ACUC    UUUUAU C CA   G    -           A   C    C  --    CCAA      U
Stem-loop sequence	GACAAGAGGAUCACGGGAGGAUUGAAGGGCAUUCUGAGAGAAAUAAACUUAUUUUAACCCUCAAUCCCCUCCAAACCUCCCGUGAUCUCUGGUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ082583.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||||||||=|||||||||||||| targets:7   AAUCCUCCUGUGAUCCUCUUGUC   29 Target Full Sequence	1.0	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||||||||||||||||*|||||| targets:289   AAUCCUCCCGUGAUCCCCUUGUC   311 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
NM_001158360.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   |||*||=|||||||=|||||||| targets:390   AAUGCUUCCGUGAUUCUCUUGUC   412 Target Full Sequence	2.5	Zea mays protein app1 (LOC100285467), mRNA	NA	coding protein	psRNATarget
EU972380.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   |||*||=|||||||=|||||||| targets:390   AAUGCUUCCGUGAUUCUCUUGUC   412 Target Full Sequence	2.5	Zea mays clone 380434 protein app1 mRNA, complete cds	NA	coding protein	psRNATarget
BT039939.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1080   AA--CUCCCCUGAUCCUUUUGUC   1100 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0052H15 mRNA, complete cds	NA	coding protein	psRNATarget
BT062836.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1084   AA--CUCCCCUGAUCCUUUUGUC   1104 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0372P21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147440.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1170   AA--CUCCCCUGAUCCUUUUGUC   1190 Target Full Sequence	2.5	Zea mays putative calcium-dependent lipid-binding (CaLB domain) family protein (LOC100272989), mRNA	NA	coding protein	psRNATarget
BT064378.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1170   AA--CUCCCCUGAUCCUUUUGUC   1190 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0163H17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678565.2	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1287   AA--CUCCCCUGAUCCUUUUGUC   1307 Target Full Sequence	2.5	PREDICTED: Zea mays putative calcium-dependent lipid-binding (CaLB domain) family protein (LOC100272989), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551357.1	ncRNA:23   UUAGGAGGGCACUAGGAGAACAG   1   ||--|||||*|||||||=||||| targets:1860   AA--CUCCCCUGAUCCUUUUGUC   1880 Target Full Sequence	2.5	PREDICTED: Zea mays putative calcium-dependent lipid-binding (CaLB domain) family protein (LOC100272989), transcript variant X2, mRNA	NA	coding protein	psRNATarget